View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20315_high_9 (Length: 413)
Name: NF20315_high_9
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20315_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 5744680 - 5744285
Alignment:
| Q |
1 |
cgcttctcaaattgaga--aattcactttagaatactacaaataaaaaa-tttaagccttaaccatggttgattttctcataaaaaattatcacattact |
97 |
Q |
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| T |
5744680 |
cgcttctcaaattgagataaattcactttagaatactacaaataaaaaaatttaagccttaggaaa---ttaggtaccca--aaaaattatcacattact |
5744586 |
T |
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| Q |
98 |
taatttatactctaaagctaataacagaaattgggtacccaaaaaatcagctacggttctgccattggaaaatcttcccgttggacctctagggaaatca |
197 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5744585 |
taatttatactctaaagctaataacagaaattaggtacccaaaaaatcggcaacggttctgccattggaaaatcttcccgttggacctctagggaaatca |
5744486 |
T |
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| Q |
198 |
actccataaggtaagaaatttgctctcgctaaagttggaagaaaattattatttccattgtctaatagggagtccccaaaaacatataatgcgggtgcaa |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5744485 |
actccataaggtaagaaatttgctctcgctaaagttggaagaaaattattattgccattgtctaatagggagtccccaaaaacatataatgcgggtgcaa |
5744386 |
T |
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| Q |
298 |
ggggaagggtaaagattggggagacgaggttaagggaaaagaatgagaaaaacataacaaaaatcatttgtttcattgtcattttcaatagataataaaa |
397 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5744385 |
ggggaagggtaaagattggggagaggaggttaagggaaaagaatgagaaaaacataacaaaaatcatttgtttcattgtcattttcaatagataataaaa |
5744286 |
T |
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