View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20315_low_11 (Length: 378)
Name: NF20315_low_11
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20315_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 359
Target Start/End: Complemental strand, 45294174 - 45293825
Alignment:
| Q |
10 |
actataaaatatccacacttgactttggatttatataagagtgaagaaattactcattttagcttgcattatcacagaaaatcatgaagcatttgtgaaa |
109 |
Q |
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| T |
45294174 |
actataaaatatccacacttgactttggatttatataagagtgaagaaattacccattttagcttgcattatcacagaaaagcatgaagcatttgtgaaa |
45294075 |
T |
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| Q |
110 |
gggctttgtatagaactgtatgcaaagcccttttcactcactttcttgcaaattaatgaattatgcagttttagcttnnnnnnntatcactatgtgatgg |
209 |
Q |
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| T |
45294074 |
gggctttgtatagaactgtatgcaaagcccttttcactcactttcttgcaaattaatgaattatgcagttttagcttaaaaaaatatcactatgtgatgg |
45293975 |
T |
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| Q |
210 |
acaagaatatgagttcaacatagttatatggtaaaagtacctagattcttccaaagattttctcaattgagtgatttcaaggcgtagattcttcattatc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45293974 |
acaagaatatgagttcaacatagttatatggtaaaagtacctagattcttccaaagattttctcaattgagtgatttcaaggcgtagattcttcattatc |
45293875 |
T |
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| Q |
310 |
ctttccactgttgaggccttggaaaatgaccaaaaatttcagaatagact |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45293874 |
ctttccactgttgaggccttggaaaatgaccaaaaatttcagaatagact |
45293825 |
T |
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