View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20315_low_12 (Length: 375)
Name: NF20315_low_12
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20315_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 44490229 - 44489895
Alignment:
| Q |
18 |
attcaccataatagaatcacctatactatagtcatgtgttgcacgaattgaactcaaatccaacacaaaccccaaccaaccactacatatataaattttg |
117 |
Q |
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| T |
44490229 |
attcaccataatagaatcacctata-----gtcatgtgttgcacgaattgaactcaaatccaacacaaaccccaaccaaccactacatatataaaatttg |
44490135 |
T |
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| Q |
118 |
aaatctagctagctctctttctatattgcaatattgcatgtcctttataacaatgggttggaaagccttctctattgctactacattctcaattttcttt |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44490134 |
aaatctagatagctctctttctatattgcaatattgcatgtcctttataacaatgggttggaaagccttctctattgctactacattctcaattttcttt |
44490035 |
T |
|
| Q |
218 |
ctccttccattctttgcatttctagctaccgcaaatgacactcttgtacctccagaaaccatttgtaaatcatcccaatatccatcttattgcacaaatc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44490034 |
ctccttccattctttgcatttctagctaccgcaaatgacacccttgtacctccagaaaccatttgtaaatcatcccaatatccatcttattgcacaaatc |
44489935 |
T |
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| Q |
318 |
tacttccaaaacaaaatgccaaagtccatgactttgctag |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
44489934 |
tacttccaaaacaaaatgccaaagtccatgactttgctag |
44489895 |
T |
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