View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20315_low_15 (Length: 326)
Name: NF20315_low_15
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20315_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 1347267 - 1347569
Alignment:
| Q |
17 |
aagttcagaggtagaactaactcaagcaatggaacaagaggtaatggctctgtgcaaaataaagcagtgtcatgaatgcaagaaatatggaca------- |
109 |
Q |
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| T |
1347267 |
aagttcagaggtagaactaactcaagcaatggaactagaggtaatggctctgtgcaaaataaagcagtgtcatgaatgcaagaaatatggacataatata |
1347366 |
T |
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| Q |
110 |
-----cagccacaaattgttctattcaaccaacgtggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaagtgcaccctagaattgttgg |
204 |
Q |
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| T |
1347367 |
tatatcagcaacaaattgttctattcaagcaacgtggttacgaaaaatgctaagcaaagcatatatcgcgtagttattaagtgtaccctagaattgttgg |
1347466 |
T |
|
| Q |
205 |
accattgatttgtataaggagacaaaacctatacttttcaaaccatcaaatccaatagtagcaggtatagaaaattaagaaaaaaccaagtatacatcta |
304 |
Q |
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| T |
1347467 |
accattgatttgtataaggagacaaaacctatacttttcaaaccatcaaatccaatagtagcaggtatagaaaattaagaaaacaccaagtatatatcta |
1347566 |
T |
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| Q |
305 |
gga |
307 |
Q |
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||| |
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| T |
1347567 |
gga |
1347569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 139 - 255
Target Start/End: Complemental strand, 8675798 - 8675681
Alignment:
| Q |
139 |
tggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaagtgcaccctagaattgttggacc-attgatttgtataaggagacaaaacctata |
237 |
Q |
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||||||| |||||||||||||| ||||||| || ||||||| |||||||||||||||||| |||| ||||||||||||||||||| || ||| || |
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| T |
8675798 |
tggttacagaaaatgctaagcaaaacatatattgcatagttatcaagtgcaccctagaattggaagaccgtttgatttgtataaggagaccaagcctgta |
8675699 |
T |
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| Q |
238 |
cttttcaaaccatcaaat |
255 |
Q |
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| T |
8675698 |
ttgttcaaaccgtcaaat |
8675681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 9619439 - 9619327
Alignment:
| Q |
109 |
acagccacaaattgttctattcaaccaacgtggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaagtgcaccctagaattgttggacca |
208 |
Q |
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||||||||||||| || || |||| ||| ||||||| ||||||||||||| |||| || || ||||||||||||||||||| |||| ||||| |
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| T |
9619439 |
acagccacaaattattttactcaagcaatttggttacagaaaatgctaagcataacatacattgcacagttattaagtgcaccctataattagaagacca |
9619340 |
T |
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| Q |
209 |
ttgatttgtataa |
221 |
Q |
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|| |||||||||| |
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| T |
9619339 |
tttatttgtataa |
9619327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 15785176 - 15785105
Alignment:
| Q |
175 |
tagttattaagtgcaccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaa |
246 |
Q |
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||||||| |||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||| | |||||| |
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| T |
15785176 |
tagttatcaagtgcaccctagaattggtggaccattaattggtataaggagaccaaacctatattgttcaaa |
15785105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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