View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20315_low_18 (Length: 281)
Name: NF20315_low_18
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20315_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 2905962 - 2906217
Alignment:
| Q |
18 |
atatgtagcatgtatgcatcaattcaactaatgtacatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2905962 |
atatgtagcatgtatgcatcaattcaactaatgtacatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatcc |
2906061 |
T |
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| Q |
118 |
attaagacatttacaacggaatttcactttatctagactaatgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906062 |
attaagacatttacaacggaatttcactttatctagactagtgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctc |
2906161 |
T |
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| Q |
218 |
aacaaaatcatcattatggtggtgttcttcctcgctgccgccaccaaattcatctc |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906162 |
aacaaaatcatcattatggtggtgttcttcctcgctgccgccaccaaattcatctc |
2906217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 2853934 - 2854189
Alignment:
| Q |
18 |
atatgtagcatgtatgcatcaattcaactaatgtacatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatcc |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2853934 |
atatgtagcatttatgcatcaattcaactaatgtacatcatcatcacttgtgtgtattagactccaatatcatatacatatcaccatgtgcattcaatcc |
2854033 |
T |
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| Q |
118 |
attaagacatttacaacggaatttcactttatctagactaatgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854034 |
attaagacatttacaacggaatttcactttatctagactagtgttcaaccgttatcaatgtttgtggtatgtcttgttcttttttggactcatgatgctc |
2854133 |
T |
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| Q |
218 |
aacaaaatcatcattatggtggtgttcttcctcgctgccgccaccaaattcatctc |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854134 |
aacaaaatcatcattatggtggtgttcttcctcgctgccgccaccaaattcatctc |
2854189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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