View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20315_low_22 (Length: 264)
Name: NF20315_low_22
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20315_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 33541486 - 33541734
Alignment:
| Q |
1 |
tcaagtttcatctagaaacttctgatctgagtnnnnnnn--gtacctagtaacttttgatacatatcccttcttttttcttcttcttattttatggattt |
98 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
33541486 |
tcaagtttcatctagaaacttctgatctgagtaaaaaaaaagtacctagtaacttttgatacatatcccttttttttt-ttcttcttattttatggattt |
33541584 |
T |
|
| Q |
99 |
tcatatatctatgactctaaactgtgtttcttaagagtttcgctatattctcaaaattcaaaactcttactcaaaatcaagggctccattctctcttttt |
198 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33541585 |
tcatatatctatgactctaaactgtgtctcttaagagtttcgctatattctcaaaattcaaaactcttactcaaaatcaagggctccattctctcttttt |
33541684 |
T |
|
| Q |
199 |
ccatgtaaatcaaacacattataaaatcccctaaaactacaacaatatca |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33541685 |
ccatgtaaatcaaacacattataaaatcccctaaaactacaacaatatca |
33541734 |
T |
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