View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20315_low_23 (Length: 260)
Name: NF20315_low_23
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20315_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 28336281 - 28336533
Alignment:
| Q |
1 |
tatgatatgcacttgtgacatttttgttggcgctataaacaacctcgccaatatctaaaacatcacctttgtaaaattttccattcacgtaatccaataa |
100 |
Q |
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| T |
28336281 |
tatgatatgcacttgtgacatttttgttggcgctataaacaacctcgccaatatctaaaacatcacctttgtaaaattttccattcacgtaatccaataa |
28336380 |
T |
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| Q |
101 |
ttcttgcaacttgtttggttagttgtggggatgagattactatggatgttatgttgccaagttttagtgtcatgattggtccgtagattttagagagnnn |
200 |
Q |
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| T |
28336381 |
ttcttgcaacttgtttggttagttgtggggatgagattactatggatgttatgttgccaagttttagtgtcatgattggtccgtagattttagagagttt |
28336480 |
T |
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| Q |
201 |
nnnngtgagtgacttgtgtgggtttttcaaagttctgagatgtctgtgctcct |
253 |
Q |
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| T |
28336481 |
ttttgtgagtgacttgtgtgggtttttcaaagttctgagatgtgtgtggtcct |
28336533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 28321125 - 28321214
Alignment:
| Q |
108 |
aacttgtttggttagttgtggggatgagattactatggatgttatgttgccaagttttagtgtcatgattggtccgtagattttagagag |
197 |
Q |
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| T |
28321125 |
aacttgtttggctacttgtggggaagagatcactatggttgttatgcttcctagttttaatgtcatgattggtccatagatttttgagag |
28321214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 28331605 - 28331737
Alignment:
| Q |
109 |
acttgtttggttagttgtggggatgagattactatggatgtt-atgttgccaagttttagtgtcatgattggtccgtagattttagagagnnnnnnngtg |
207 |
Q |
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| T |
28331605 |
acttgtttggctagttgtggtgatgagattactatggttgttaatgtt-cctagttttaatgtcatgattggtccataggtttttgagag---ttttgtg |
28331700 |
T |
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| Q |
208 |
agtgacttgtgtgggttttt-caaagttctgagatgt |
243 |
Q |
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|||| ||||||||||||||| | ||||||| |||||| |
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| T |
28331701 |
agtgccttgtgtgggtttttgccaagttctaagatgt |
28331737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 28310551 - 28310640
Alignment:
| Q |
108 |
aacttgtttggttagttgtggggatgagattactatggatgtt-atgttgccaagttttagtgtcatgattggtccgtagattttagagag |
197 |
Q |
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| T |
28310551 |
aacttgtttggctagttgaggtgatgagattactatggttgttaatgtt-cctagttttagtgtcataattggtccatagatgtttgagag |
28310640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 28297065 - 28297137
Alignment:
| Q |
110 |
cttgtttggttagttgtggggatgagattactatggatgttatgttgccaagttttagtgtcatgattggtcc |
182 |
Q |
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| T |
28297065 |
cttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatgattggtcc |
28297137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 28296801 - 28296876
Alignment:
| Q |
37 |
aaacaacctcgccaatatctaaaacatcacctttgtaaaattttccattcacgtaatccaataattcttgcaactt |
112 |
Q |
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| T |
28296801 |
aaacagcctcaccaatatcaaaaacctcacctttgttgcttttttcattcacataatccaataattcttgcaactt |
28296876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 28288150 - 28288061
Alignment:
| Q |
108 |
aacttgtttggttagttgtggggatgagattactatggatgtt-atgttgccaagttttagtgtcatgattggtccgtagattttagagag |
197 |
Q |
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| T |
28288150 |
aacttgtttggctaattgtggtgatgaaattactatggttgttaatgtt-cctagttttagtgtcataattggtccatagatgtttgagag |
28288061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 28320874 - 28320938
Alignment:
| Q |
48 |
ccaatatctaaaacatcacctttgtaaaattttccattcacgtaatccaataattcttgcaactt |
112 |
Q |
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| T |
28320874 |
ccaatatcaaaaacctcacctttgttacttttttcattcacataatctaataattcttgcaactt |
28320938 |
T |
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