View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20315_low_25 (Length: 254)
Name: NF20315_low_25
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20315_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 47060197 - 47060423
Alignment:
| Q |
11 |
cagagattcagctatgaataaagacttgagagatgattcagaggagaatttggtctctaaggcatctatgcatgattctggcaactttgtgctttatgat |
110 |
Q |
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| T |
47060197 |
cagagattcagctatgaataaagacttgagagatgattcagaggagaatttggtctctaaggcatctatgcatgattctggcaactttgtgctttatgat |
47060296 |
T |
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| Q |
111 |
gagaattctacagttatatggcaaagctttgatcacccaacagacaccatattaggaggtcagaatttgactgctggtgatcatctaatctctagtatat |
210 |
Q |
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| T |
47060297 |
gagaattctacagttatatggcaaagctttgatcacccaacagacaccatattaggaggtcagagtttgactgctgatgattatttaatctctagtatat |
47060396 |
T |
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| Q |
211 |
ccaagtcagaccattcaaggggatgtt |
237 |
Q |
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| T |
47060397 |
ccaagtcagaccattcaaggggatgtt |
47060423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 47081605 - 47081425
Alignment:
| Q |
11 |
cagagattcagctatgaataaagacttgagagatgattcagaggagaatttggtctctaaggcatctatgcatgattctggcaactttgtgctttatgat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47081605 |
cagagattcagctatgaataaagacttgagagatgattcagaggagaatttggtctctaaggcatctatgcatgattctggcaactttgtgctttatgat |
47081506 |
T |
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| Q |
111 |
gagaattctacagttatatggcaaagctttgatcacccaacagacaccatattaggaggtcagaatttgactgctggtgat |
191 |
Q |
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| T |
47081505 |
gagaattctacagttatatggcaaagctttgatcacccaacagacaccatattaggaggtcagagtttgactgctgctgat |
47081425 |
T |
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