View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20315_low_34 (Length: 215)
Name: NF20315_low_34
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20315_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 33372397 - 33372479
Alignment:
| Q |
122 |
agactatagtgaagaatgttagaaggaagaagaaaagccaaagacggtgagagtgaaagggtgttgttggagcttgtttgtga |
204 |
Q |
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| T |
33372397 |
agactatagtgaagaatgttagaaggaagaagaaaagccaaagacggtgagagtgaaagggtgttgttggagcttgtttgtga |
33372479 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33372276 - 33372316
Alignment:
| Q |
1 |
gtgtttgatgaggaggcatagtggaggagggctttggttac |
41 |
Q |
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|||||| | |||||||||||||||||||||||||||||||| |
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| T |
33372276 |
gtgtttaaggaggaggcatagtggaggagggctttggttac |
33372316 |
T |
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