View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20315_low_4 (Length: 645)

Name: NF20315_low_4
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20315_low_4
NF20315_low_4
[»] chr3 (4 HSPs)
chr3 (13-630)||(8697450-8698067)
chr3 (13-630)||(9049337-9049954)
chr3 (378-478)||(20669118-20669217)
chr3 (411-479)||(2128316-2128383)
[»] chr8 (3 HSPs)
chr8 (147-196)||(13411339-13411388)
chr8 (432-478)||(14482141-14482187)
chr8 (432-476)||(1470941-1470985)
[»] chr6 (6 HSPs)
chr6 (425-475)||(31964674-31964724)
chr6 (371-479)||(24836220-24836331)
chr6 (375-416)||(10031739-10031780)
chr6 (434-475)||(31968104-31968145)
chr6 (350-397)||(2460147-2460195)
chr6 (434-478)||(2514641-2514685)
[»] chr5 (4 HSPs)
chr5 (387-424)||(42573808-42573845)
chr5 (434-479)||(35960352-35960397)
chr5 (411-478)||(11054125-11054190)
chr5 (434-478)||(37063161-37063205)
[»] chr1 (1 HSPs)
chr1 (348-432)||(27140469-27140554)
[»] chr4 (6 HSPs)
chr4 (378-442)||(52259612-52259676)
chr4 (416-478)||(30338662-30338723)
chr4 (425-479)||(51044537-51044591)
chr4 (381-454)||(41701476-41701548)
chr4 (378-422)||(17975394-17975438)
chr4 (350-397)||(27123348-27123396)
[»] chr7 (4 HSPs)
chr7 (417-479)||(1417202-1417263)
chr7 (416-454)||(7453467-7453505)
chr7 (414-487)||(27121654-27121726)
chr7 (419-479)||(30496642-30496701)
[»] chr2 (4 HSPs)
chr2 (378-476)||(40837460-40837557)
chr2 (437-478)||(12215746-12215787)
chr2 (378-422)||(3078665-3078709)
chr2 (434-478)||(37033983-37034027)


Alignment Details
Target: chr3 (Bit Score: 590; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 13 - 630
Target Start/End: Complemental strand, 8698067 - 8697450
Alignment:
Q  13 attattcttatggtggatctgagttgacttaccaaggcttttcaaatggttctggtaatggtttttatggctcttttgatggagttaacactatggaatc 112  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8698067 attactcttatggtggatctgagttgatttaccaaggcttttcaaatggttctggtaatggtttttatggctcttttggtggagttaacactatggaatc 8697968  T
Q  113 ggatgattctaatcaatctaaaattggtgttaggaattgctccaatcttattaggcaaaagagttcacctgctgaatttttctctaatgaaaatggtatg 212  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697967 agatgattctaatcaatctaaaattggtgttaggaattgctccaatcttattaggcaaaagagttcacctgctgaatttttctctaatgaaaatggtatg 8697868  T
Q  213 aattttatcttatttgcaaactgttatagattttactatgtgctttttcccctatggtagtaattaaggtctgtttggattagcttattgggcttatcca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697867 aattttatcttatttgcaaactgttatagattttactatgtgctttttcccctatggtagtaattaaggtctgtttggattagcttattgggcttatcca 8697768  T
Q  313 ctaacatacacacttattatcagactatttggacgagcttatgacatgtctttaagtttttccatcttatttccttaagctctcctagatagcttagaaa 412  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697767 ctaacatacacacttattatcagactatttgggcgagcttatgacatgtctttaagtttttccatcttatttccttaagctctcctagatagcttagaaa 8697668  T
Q  413 aacagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaagagttataaagagtttatttcctaaaactctta 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697667 aacagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaagagttataaagagtttatttcctaaaactctta 8697568  T
Q  513 tgccataagtctttattcaaacagggcttaatgttttcatataattgaaagataaatgttatgatttaaattgaaatacttctcttgtatgaaaccaaga 612  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8697567 tgccataagtctttatccaaacagggcttaatgttttcatataattgaaagataaatgttatgatttaaattgaaatacttctcttgtatgaaaccaaaa 8697468  T
Q  613 aaaaacaaatgaacaatt 630  Q
    ||||||||||||||||||    
T  8697467 aaaaacaaatgaacaatt 8697450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 13 - 630
Target Start/End: Complemental strand, 9049954 - 9049337
Alignment:
Q  13 attattcttatggtggatctgagttgacttaccaaggcttttcaaatggttctggtaatggtttttatggctcttttgatggagttaacactatggaatc 112  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9049954 attactcttatggtggatctgagttgatttaccaaggcttttcaaatggttctggtaatggtttttatggctcttttggtggagttaacactatggaatc 9049855  T
Q  113 ggatgattctaatcaatctaaaattggtgttaggaattgctccaatcttattaggcaaaagagttcacctgctgaatttttctctaatgaaaatggtatg 212  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9049854 agatgattctaatcaatctaaaattggtgttaggaattgctccaatcttattaggcaaaagagttcacctgctgaatttttctctaatgaaaatggtatg 9049755  T
Q  213 aattttatcttatttgcaaactgttatagattttactatgtgctttttcccctatggtagtaattaaggtctgtttggattagcttattgggcttatcca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9049754 aattttatcttatttgcaaactgttatagattttactatgtgctttttcccctatggtagtaattaaggtctgtttggattagcttattgggcttatcca 9049655  T
Q  313 ctaacatacacacttattatcagactatttggacgagcttatgacatgtctttaagtttttccatcttatttccttaagctctcctagatagcttagaaa 412  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9049654 ctaacatacacacttattatcagactatttgggcgagcttatgacatgtctttaagtttttccatcttatttccttaagctctcctagatagcttagaaa 9049555  T
Q  413 aacagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaagagttataaagagtttatttcctaaaactctta 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9049554 aacagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaagagttataaagagtttatttcctaaaactctta 9049455  T
Q  513 tgccataagtctttattcaaacagggcttaatgttttcatataattgaaagataaatgttatgatttaaattgaaatacttctcttgtatgaaaccaaga 612  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9049454 tgccataagtctttatccaaacagggcttaatgttttcatataattgaaagataaatgttatgatttaaattgaaatacttctcttgtatgaaaccaaaa 9049355  T
Q  613 aaaaacaaatgaacaatt 630  Q
    ||||||||||||||||||    
T  9049354 aaaaacaaatgaacaatt 9049337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 478
Target Start/End: Complemental strand, 20669217 - 20669118
Alignment:
Q  378 cttatttccttaagctctcctagatagcttagaaaaacagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacata 477  Q
    ||||||| | |||||||||| ||||||||||  ||||||||||||| || ||| | |||||||||||| ||| | || || ||| ||||| |||||||||    
T  20669217 cttatttacataagctctccaagatagcttatgaaaacagcttatatgacaac-attttgactttattgtatatcttgttatagaaatagcttatacata 20669119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 479
Target Start/End: Original strand, 2128316 - 2128383
Alignment:
Q  411 aaaacagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaa 479  Q
    ||||||||||| || ||||||| ||| |||||||| |||||||| || ||| ||||| |||||||||||    
T  2128316 aaaacagcttacagtaaaacaa-tttaactttattttatcttttgttatagaaatagcttatacataaa 2128383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 13411388 - 13411339
Alignment:
Q  147 aattgctccaatcttattaggcaaaagagttcacctgctgaatttttctc 196  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  13411388 aattgctccaatcttattaggcaaaagagttctcctgctgagtttttctc 13411339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 432 - 478
Target Start/End: Complemental strand, 14482187 - 14482141
Alignment:
Q  432 aatttgactttattctatcttttattgtaggaatagtttatacataa 478  Q
    |||||||||||||| |||||||| || ||| ||||||||||||||||    
T  14482187 aatttgactttattttatcttttgttatagaaatagtttatacataa 14482141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 476
Target Start/End: Original strand, 1470941 - 1470985
Alignment:
Q  432 aatttgactttattctatcttttattgtaggaatagtttatacat 476  Q
    |||||||||||||| ||||||||||| ||| ||||| ||||||||    
T  1470941 aatttgactttattttatcttttattatagaaatagcttatacat 1470985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 475
Target Start/End: Original strand, 31964674 - 31964724
Alignment:
Q  425 gaaaacaaatttgactttattctatcttttattgtaggaatagtttataca 475  Q
    |||||||  |||||||||||| |||||||||||||||||||||||||||||    
T  31964674 gaaaacagttttgactttattttatcttttattgtaggaatagtttataca 31964724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 479
Target Start/End: Original strand, 24836220 - 24836331
Alignment:
Q  371 tttccatcttatttccttaagctctcctagatagcttagaaaaac----agcttataggaaaacaaatttgactttattctatcttttattgtaggaata 466  Q
    |||||| ||||||||| ||||||||||  |||||||||  |||||    || ||||| |||||||| |||||||||||| |||||||| || ||| ||||    
T  24836220 tttccagcttatttccataagctctccatgatagcttacgaaaacttatagtttatacgaaaacaa-tttgactttattttatcttttgttatagaaata 24836318  T
Q  467 gtttatacataaa 479  Q
      |||||||||||    
T  24836319 acttatacataaa 24836331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 10031780 - 10031739
Alignment:
Q  375 catcttatttccttaagctctcctagatagcttagaaaaaca 416  Q
    ||||||||||||||||||||||| ||| |||||| |||||||    
T  10031780 catcttatttccttaagctctccaagacagcttataaaaaca 10031739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 475
Target Start/End: Original strand, 31968104 - 31968145
Alignment:
Q  434 tttgactttattctatcttttattgtaggaatagtttataca 475  Q
    |||||||||||| ||| || ||||||||||||||||||||||    
T  31968104 tttgactttattttattttctattgtaggaatagtttataca 31968145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 397
Target Start/End: Original strand, 2460147 - 2460195
Alignment:
Q  350 cttatgacatgtctttaagtt-tttccatcttatttccttaagctctcc 397  Q
    ||||||||||||||||||||| ||| || ||||||||| ||||||||||    
T  2460147 cttatgacatgtctttaagttgttttcaacttatttccataagctctcc 2460195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 434 - 478
Target Start/End: Complemental strand, 2514685 - 2514641
Alignment:
Q  434 tttgactttattctatcttttattgtaggaatagtttatacataa 478  Q
    |||||||||||| ||||||||||| ||| ||||| ||||||||||    
T  2514685 tttgactttattttatcttttattatagaaatagcttatacataa 2514641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 387 - 424
Target Start/End: Original strand, 42573808 - 42573845
Alignment:
Q  387 ttaagctctcctagatagcttagaaaaacagcttatag 424  Q
    |||||||||||||||||||||| |||||||||||||||    
T  42573808 ttaagctctcctagatagcttataaaaacagcttatag 42573845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 479
Target Start/End: Complemental strand, 35960397 - 35960352
Alignment:
Q  434 tttgactttattctatcttttattgtaggaatagtttatacataaa 479  Q
    |||||||||||| ||||||||||| ||| |||||||||| ||||||    
T  35960397 tttgactttattttatcttttattatagaaatagtttatgcataaa 35960352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 478
Target Start/End: Complemental strand, 11054190 - 11054125
Alignment:
Q  411 aaaacagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataa 478  Q
    |||||| |||||| |||||| ||||  |||||||| ||||||||||| ||| ||||| ||||||||||    
T  11054190 aaaacatcttatacgaaaactaatt--actttattttatcttttattatagaaatagcttatacataa 11054125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 434 - 478
Target Start/End: Original strand, 37063161 - 37063205
Alignment:
Q  434 tttgactttattctatcttttattgtaggaatagtttatacataa 478  Q
    |||||||||||| |||||||| || ||| ||||||||||||||||    
T  37063161 tttgactttattttatcttttgttatagaaatagtttatacataa 37063205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 27140554 - 27140469
Alignment:
Q  348 agcttatgacatgtctttaagtt-tttccatcttatttccttaagctctcctagatagcttagaaaaacagcttataggaaaacaa 432  Q
    |||||||||||||||  |||||| ||| || ||||||| | ||||||||||  ||||||||| ||||||||||||||  |||||||    
T  27140554 agcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaacagcttatataaaaacaa 27140469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 442
Target Start/End: Complemental strand, 52259676 - 52259612
Alignment:
Q  378 cttatttccttaagctctcctagatagcttagaaaaacagcttataggaaaacaaatttgacttt 442  Q
    ||||||| | |||||||||| |||||||||| |||||||||||||| | ||| ||| ||||||||    
T  52259676 cttattttcataagctctcccagatagcttataaaaacagcttatacggaaaaaaaattgacttt 52259612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 416 - 478
Target Start/End: Original strand, 30338662 - 30338723
Alignment:
Q  416 agcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataa 478  Q
    |||||||| |||||||  ||| ||||||||||||||||| || ||| ||||||||||||||||    
T  30338662 agcttatatgaaaacag-tttaactttattctatcttttgttatagaaatagtttatacataa 30338723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 425 - 479
Target Start/End: Original strand, 51044537 - 51044591
Alignment:
Q  425 gaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaa 479  Q
    |||||||| |||||||||||| |||||||| || ||| ||||| |||||||||||    
T  51044537 gaaaacaagtttgactttattttatcttttgttatagaaatagcttatacataaa 51044591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 454
Target Start/End: Original strand, 41701476 - 41701548
Alignment:
Q  381 atttccttaagctctcctagatagcttagaaaaacagcttataggaaaacaaatttgactttattctatctttt 454  Q
    |||||| || ||||||||  ||||||||  ||||||||||||| ||||||  ||||||||||||| ||||||||    
T  41701476 atttccatatgctctcctgtatagcttattaaaacagcttatatgaaaac-gatttgactttattttatctttt 41701548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 17975394 - 17975438
Alignment:
Q  378 cttatttccttaagctctcctagatagcttagaaaaacagcttat 422  Q
    |||||||||  ||||||||| |||||||||| |||||||||||||    
T  17975394 cttatttccagaagctctccaagatagcttataaaaacagcttat 17975438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 397
Target Start/End: Original strand, 27123348 - 27123396
Alignment:
Q  350 cttatgacatgtctttaagtt-tttccatcttatttccttaagctctcc 397  Q
    ||||||||||||||||||||| ||| || ||||||||| ||||||||||    
T  27123348 cttatgacatgtctttaagttgttttcaacttatttccataagctctcc 27123396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 417 - 479
Target Start/End: Complemental strand, 1417263 - 1417202
Alignment:
Q  417 gcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaa 479  Q
    ||||||| |||||||| |||||||||||| |||||||| || ||  |||||||||||||||||    
T  1417263 gcttatatgaaaacaa-tttgactttattttatcttttgttatataaatagtttatacataaa 1417202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 416 - 454
Target Start/End: Original strand, 7453467 - 7453505
Alignment:
Q  416 agcttataggaaaacaaatttgactttattctatctttt 454  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  7453467 agcttatatgaaaacaaatttgactttattttatctttt 7453505  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 487
Target Start/End: Original strand, 27121654 - 27121726
Alignment:
Q  414 acagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaagagttata 487  Q
    |||||||||| |||||||| |||||||||||| |||| |||||| ||| ||||  |||||||||| || |||||    
T  27121654 acagcttatatgaaaacaa-tttgactttattttatcatttattatagaaatatcttatacataaggaattata 27121726  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 419 - 479
Target Start/End: Complemental strand, 30496701 - 30496642
Alignment:
Q  419 ttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacataaa 479  Q
    ||||| |||||||| |||||||||||| ||| |||| || ||| |||||||||||||||||    
T  30496701 ttatacgaaaacaa-tttgactttattttatattttgttatagaaatagtttatacataaa 30496642  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 378 - 476
Target Start/End: Original strand, 40837460 - 40837557
Alignment:
Q  378 cttatttccttaagctctcctagatagcttagaaaaacagcttataggaaaacaaatttgactttattctatcttttattgtaggaatagtttatacat 476  Q
    ||||||||| |||||||| |  |||||||||  |||||| | |||| |||||||| |||||||||| | |||||||| || ||| ||||| ||||||||    
T  40837460 cttatttccataagctctacatgatagcttattaaaacaacatatatgaaaacaa-tttgactttaatttatcttttgttatagaaatagcttatacat 40837557  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 478
Target Start/End: Complemental strand, 12215787 - 12215746
Alignment:
Q  437 gactttattctatcttttattgtaggaatagtttatacataa 478  Q
    ||||||||| |||||||| |||||| ||||||||||||||||    
T  12215787 gactttattttatcttttgttgtagaaatagtttatacataa 12215746  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 3078665 - 3078709
Alignment:
Q  378 cttatttccttaagctctcctagatagcttagaaaaacagcttat 422  Q
    |||||||||  ||||||||| |||||||||| |||||||||||||    
T  3078665 cttatttccagaagctctccaagatagcttataaaaacagcttat 3078709  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 434 - 478
Target Start/End: Complemental strand, 37034027 - 37033983
Alignment:
Q  434 tttgactttattctatcttttattgtaggaatagtttatacataa 478  Q
    |||||||||||| |||||||| || ||| ||||||||||||||||    
T  37034027 tttgactttattttatctttttttatagaaatagtttatacataa 37033983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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