View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20315_low_5 (Length: 550)

Name: NF20315_low_5
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20315_low_5
NF20315_low_5
[»] chr7 (8 HSPs)
chr7 (18-175)||(32649322-32649481)
chr7 (174-290)||(10461021-10461142)
chr7 (353-429)||(10461197-10461273)
chr7 (48-108)||(32545278-32545338)
chr7 (176-290)||(13071671-13071786)
chr7 (176-229)||(26626028-26626081)
chr7 (177-229)||(44523895-44523947)
chr7 (174-229)||(33438498-33438552)
[»] chr8 (13 HSPs)
chr8 (181-290)||(22342415-22342524)
chr8 (176-290)||(15004714-15004828)
chr8 (353-429)||(15004583-15004659)
chr8 (353-429)||(22354239-22354315)
chr8 (353-429)||(22342579-22342655)
chr8 (175-223)||(9995307-9995355)
chr8 (176-225)||(43801112-43801161)
chr8 (175-219)||(36701203-36701247)
chr8 (176-227)||(30232864-30232915)
chr8 (179-229)||(13248676-13248726)
chr8 (176-283)||(33365014-33365120)
chr8 (176-229)||(24616860-24616913)
chr8 (176-229)||(31627565-31627617)
[»] chr3 (13 HSPs)
chr3 (176-290)||(44273591-44273705)
chr3 (176-290)||(1668776-1668890)
chr3 (353-429)||(1672198-1672274)
chr3 (353-429)||(44270216-44270292)
chr3 (179-229)||(11342445-11342495)
chr3 (175-229)||(52965196-52965250)
chr3 (176-229)||(4774490-4774542)
chr3 (179-228)||(37735160-37735209)
chr3 (173-283)||(39085348-39085457)
chr3 (175-229)||(53592968-53593021)
chr3 (176-229)||(12026239-12026291)
chr3 (177-234)||(28700394-28700451)
chr3 (177-225)||(46551678-46551726)
[»] chr4 (7 HSPs)
chr4 (175-290)||(26074818-26074933)
chr4 (353-429)||(26071428-26071504)
chr4 (176-229)||(33616135-33616188)
chr4 (176-225)||(26687784-26687833)
chr4 (176-229)||(35671033-35671086)
chr4 (176-225)||(24221263-24221312)
chr4 (177-229)||(39068050-39068102)
[»] chr2 (9 HSPs)
chr2 (175-229)||(5703186-5703240)
chr2 (176-229)||(13369239-13369292)
chr2 (176-229)||(17205701-17205754)
chr2 (173-229)||(22417120-22417175)
chr2 (175-229)||(14793877-14793931)
chr2 (174-229)||(5533258-5533313)
chr2 (186-224)||(20463946-20463984)
chr2 (176-229)||(24934994-24935047)
chr2 (176-229)||(25683686-25683739)
[»] chr1 (11 HSPs)
chr1 (174-229)||(19263544-19263599)
chr1 (176-229)||(32829979-32830032)
chr1 (175-223)||(28251516-28251564)
chr1 (176-229)||(8059029-8059081)
chr1 (176-229)||(14949481-14949534)
chr1 (175-223)||(14190494-14190542)
chr1 (174-283)||(31200556-31200664)
chr1 (176-283)||(51251235-51251342)
chr1 (176-229)||(14939465-14939518)
chr1 (176-229)||(14944709-14944762)
chr1 (176-229)||(28882494-28882547)
[»] chr5 (5 HSPs)
chr5 (176-229)||(40484960-40485012)
chr5 (176-225)||(4421846-4421895)
chr5 (174-213)||(14634728-14634767)
chr5 (176-229)||(23927823-23927875)
chr5 (180-225)||(34490640-34490685)
[»] chr6 (5 HSPs)
chr6 (177-229)||(24495743-24495795)
chr6 (176-283)||(8770545-8770651)
chr6 (175-225)||(9606518-9606568)
chr6 (175-229)||(4151466-4151520)
chr6 (176-229)||(35165971-35166024)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 3e-71; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 32649322 - 32649481
Alignment:
Q  18 ataaaggaattaacttaaatatagttaaattgtttatacatttttcttgtagataaaattatgtgtacatgcaaagagacctattgcatatcattggaa- 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  32649322 ataaaggaattaacttaaatatggttaaattgtttatacatttttcttgtagataaaattatgtgtacatgcaaagagacctattgcatatcattcgaaa 32649421  T
Q  117 -atagcaccagcaatgcaaagaggccattaatactattttcatttgtatgtcatttctac 175  Q
     ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32649422 tatagcaccagcaatgcaaagaggccattaatactatttttatttgtatgtcatttctac 32649481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 174 - 290
Target Start/End: Original strand, 10461021 - 10461142
Alignment:
Q  174 actaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnnc-----gggttgggtcgggtaaatgggtga 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |     |||||||||||||||||||||||     
T  10461021 actaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccaaaaaaacgggttgggttgggtcgggtaaatgggtgc 10461120  T
Q  269 atgtggttttaaaaattgatat 290  Q
    ||||||||||||||||||||||    
T  10461121 atgtggttttaaaaattgatat 10461142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 353 - 429
Target Start/End: Original strand, 10461197 - 10461273
Alignment:
Q  353 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacattaaga 429  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  10461197 ttggtggagatggagaatataaacgatgaagtcatgactcttttgaattgtggggaatgttaatgatgacatcaaga 10461273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 32545338 - 32545278
Alignment:
Q  48 tgtttatacatttttcttgtagataaaattatgtgtacatgcaaagagacctattgcatat 108  Q
    ||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  32545338 tgtttgtacatttttcttatagataaaattatgtctacatgcaaagagacctattgcatat 32545278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 290
Target Start/End: Complemental strand, 13071786 - 13071671
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaa-ccnnnnnnncgggttgggtcgggtaaatgggtgaatgtgg 274  Q
    ||||||||||||||||||||||||| ||| |||||||  ||||||||||  ||| |||| ||       ||||||||  |||||||||||||||||||||    
T  13071786 taggggtgtacatgggttgggtcaatccgaaaaaccccatcaaacccacaaaaaaaaaaaccaaaaaaacgggttggaccgggtaaatgggtgaatgtgg 13071687  T
Q  275 ttttaaaaattgatat 290  Q
    |||||||||| |||||    
T  13071686 ttttaaaaatcgatat 13071671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 26626081 - 26626028
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||||  |||||||||||||||||  ||||||||||||||||||||||||    
T  26626081 taggggtgtttatgggttgggtcaacccaaaaaacccggtcaaacccacccaaa 26626028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 44523895 - 44523947
Alignment:
Q  177 aggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||| || ||||||||||||||| |||||||||||||||  ||||||||    
T  44523895 aggggtgttcacgggttgggtcaacccagaaaacccggtcaaattcacccaaa 44523947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 33438498 - 33438552
Alignment:
Q  174 actaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||||||||||||||||||| |||||  ||||||| |||||||||| |||||    
T  33438498 actaggggtgtacatgggttgggtaaacccaaaaaaccc-gtcaaacccatccaaa 33438552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 181 - 290
Target Start/End: Original strand, 22342415 - 22342524
Alignment:
Q  181 gtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtggttttaa 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  22342415 gtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccaaaaaaacgggttgggtcgggtaaatgggtgaatgtggttttaa 22342514  T
Q  281 aaattgatat 290  Q
    ||||||||||    
T  22342515 aaattgatat 22342524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 176 - 290
Target Start/End: Complemental strand, 15004828 - 15004714
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtggt 275  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||    
T  15004828 taggggtgtacatgggttgggtcaacccggaaaaccaggtcaaacccacctaaagaaaaccaaaaaaacgggttgggtcgggtaaatgggtgaatgtggt 15004729  T
Q  276 tttaaaaattgatat 290  Q
    |||||||||||||||    
T  15004728 tttaaaaattgatat 15004714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 353 - 429
Target Start/End: Complemental strand, 15004659 - 15004583
Alignment:
Q  353 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacattaaga 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15004659 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaaga 15004583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 353 - 429
Target Start/End: Original strand, 22354239 - 22354315
Alignment:
Q  353 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacattaaga 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22354239 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaaga 22354315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 353 - 429
Target Start/End: Original strand, 22342579 - 22342655
Alignment:
Q  353 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacattaaga 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  22342579 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaattttaatgatgacatcaaga 22342655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 9995355 - 9995307
Alignment:
Q  175 ctaggggtgtacatgggttgggtcaacccggaaaacccggtcaaaccca 223  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||||    
T  9995355 ctaggagtgttcatgggttgggtcaacccagaaaacccggtcaaaccca 9995307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 43801161 - 43801112
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacc 225  Q
    ||||||||| ||||||||||| ||||||  ||||||||||||||||||||    
T  43801161 taggggtgttcatgggttgggccaacccaaaaaacccggtcaaacccacc 43801112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 36701247 - 36701203
Alignment:
Q  175 ctaggggtgtacatgggttgggtcaacccggaaaacccggtcaaa 219  Q
    |||||||||||||||||||||||||||  | ||||||||||||||    
T  36701247 ctaggggtgtacatgggttgggtcaacatgtaaaacccggtcaaa 36701203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 30232864 - 30232915
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccaccca 227  Q
    ||||||| ||||| ||||||||||||||| |||||| |||||||| ||||||    
T  30232864 taggggtatacataggttgggtcaacccgaaaaacctggtcaaactcaccca 30232915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 13248726 - 13248676
Alignment:
Q  179 gggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||| |||||||||||| ||||| ||||||||  |||||||||||||||    
T  13248726 gggtgttcatgggttgggtaaacccagaaaacccaatcaaacccacccaaa 13248676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 283
Target Start/End: Original strand, 33365014 - 33365120
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtggt 275  Q
    |||||||||||||||||||||| |||||  ||||||| |||||||||| ||||| ||| ||        ||||||||| |||| | |||||| || ||||    
T  33365014 taggggtgtacatgggttgggtaaacccaaaaaaccc-gtcaaacccatccaaaaaaatccaaaaaagtgggttgggttgggtgattgggtggatatggt 33365112  T
Q  276 tttaaaaa 283  Q
    ||||||||    
T  33365113 tttaaaaa 33365120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 24616860 - 24616913
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||| |||| |||||||||||||||||| ||||||| ||||||| ||| |||||    
T  24616860 taggagtgttcatgggttgggtcaacccagaaaacctggtcaaatccatccaaa 24616913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 31627565 - 31627617
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||||||||||||||||| |||||  |||||||  |||||||||||||||    
T  31627565 taggggtgtacatgggttgggtaaacccaaaaaaccc-atcaaacccacccaaa 31627617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 176 - 290
Target Start/End: Complemental strand, 44273705 - 44273591
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtggt 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||| ||||||||||||||||||||||    
T  44273705 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccaaaaaaatgggttgggccgggtaaatgggtgaatgtggt 44273606  T
Q  276 tttaaaaattgatat 290  Q
    |||||||||||||||    
T  44273605 tttaaaaattgatat 44273591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 176 - 290
Target Start/End: Original strand, 1668776 - 1668890
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtggt 275  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||        |||||||| ||||||||||||||||||||||    
T  1668776 taggggtgtacatgggttgggttaatccggaaaacccggtcaaacccacccaaagaaaaccaaaaaaatgggttgggccgggtaaatgggtgaatgtggt 1668875  T
Q  276 tttaaaaattgatat 290  Q
    |||||||||||||||    
T  1668876 tttaaaaattgatat 1668890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 353 - 429
Target Start/End: Original strand, 1672198 - 1672274
Alignment:
Q  353 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacattaaga 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1672198 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaaga 1672274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 353 - 429
Target Start/End: Complemental strand, 44270292 - 44270216
Alignment:
Q  353 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacattaaga 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44270292 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaaga 44270216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 11342445 - 11342495
Alignment:
Q  179 gggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||||    
T  11342445 gggtgtacatgggttgggtcaaaccggaaaacttggtcaaacccacccaaa 11342495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 52965196 - 52965250
Alignment:
Q  175 ctaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    ||||| |||| |||||||||||||||||  ||||| |||||||||||||||||||    
T  52965196 ctaggagtgttcatgggttgggtcaacctagaaaatccggtcaaacccacccaaa 52965250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 4774542 - 4774490
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||||||||||||||||| |||||  ||||||| ||||||||||||||||    
T  4774542 taggggtgtacatgggttgggtaaacccaaaaaaccc-gtcaaacccacccaaa 4774490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 37735160 - 37735209
Alignment:
Q  179 gggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaa 228  Q
    |||||| |||||||||||||||||| ||||| | ||||||||||||||||    
T  37735160 gggtgttcatgggttgggtcaacccagaaaatctggtcaaacccacccaa 37735209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 283
Target Start/End: Complemental strand, 39085457 - 39085348
Alignment:
Q  173 tactaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgt 272  Q
    ||||||||||||||||||||||||| |||||  ||||||| |||||||||| ||||| ||| ||        ||||||||| |||| | |||||| || |    
T  39085457 tactaggggtgtacatgggttgggtaaacccaaaaaaccc-gtcaaacccatccaaaaaaacccaaaaaagtgggttgggttgggtgattgggtggatat 39085359  T
Q  273 ggttttaaaaa 283  Q
    |||||||||||    
T  39085358 ggttttaaaaa 39085348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 53593021 - 53592968
Alignment:
Q  175 ctaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||||| ||||||||||||||||||  |||| || ||||||||||||||||    
T  53593021 ctaggggtgttcatgggttgggtcaacccaaaaaaacc-gtcaaacccacccaaa 53592968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 12026291 - 12026239
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||||||||||||||||| |||||  |||| || ||||||||||||||||    
T  12026291 taggggtgtacatgggttgggtaaacccaaaaaaacc-gtcaaacccacccaaa 12026239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 28700451 - 28700394
Alignment:
Q  177 aggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaa 234  Q
    |||||| | ||| ||||||||||||||| ||||||||||||||| || ||||| ||||    
T  28700451 aggggtatgcataggttgggtcaacccgaaaaacccggtcaaactcatccaaaaaaaa 28700394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 46551678 - 46551726
Alignment:
Q  177 aggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacc 225  Q
    |||||||| ||||||||||||||| || |||||| |||||||| |||||    
T  46551678 aggggtgttcatgggttgggtcaatccagaaaactcggtcaaatccacc 46551726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 175 - 290
Target Start/End: Complemental strand, 26074933 - 26074818
Alignment:
Q  175 ctaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtgg 274  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||        |||||||| |||||||||||||||||||||    
T  26074933 ctaggggtgtacatgggttgggtcaacccgaaaaatccggtcaaacccacccaaagaaaaccaaaaaaatgggttgggccgggtaaatgggtgaatgtgg 26074834  T
Q  275 ttttaaaaattgatat 290  Q
    ||||||||||||||||    
T  26074833 ttttaaaaattgatat 26074818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 353 - 429
Target Start/End: Complemental strand, 26071504 - 26071428
Alignment:
Q  353 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacattaaga 429  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  26071504 ttggtggagatggagaatataaacgatgaagtcaagactcttttgaattgtggggaatgttaatgatgacatcaaga 26071428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 33616188 - 33616135
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    ||||||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  33616188 taggggtgttcatgggttgggtcaacccaaaaaacccggtcaaacccacccaaa 33616135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 26687784 - 26687833
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacc 225  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| ||||    
T  26687784 taggggtgttcatgggttgggtcaacccagaaaacccggtcaaactcacc 26687833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 35671086 - 35671033
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    ||||||||| |||||||||||||||||  ||||||||| |||||||||||||||    
T  35671086 taggggtgttcatgggttgggtcaacctagaaaacccgatcaaacccacccaaa 35671033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 24221263 - 24221312
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacc 225  Q
    ||||||||| ||||||||||||||||||  ||||| ||||||||||||||    
T  24221263 taggggtgttcatgggttgggtcaacccacaaaactcggtcaaacccacc 24221312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 39068050 - 39068102
Alignment:
Q  177 aggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||| |||||||||||||||| | ||||| |||||||||||||| ||||    
T  39068050 aggggtgttcatgggttgggtcaactcagaaaatccggtcaaacccactcaaa 39068102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 5703240 - 5703186
Alignment:
Q  175 ctaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||||| |||||||||||||||||| ||||||||||||||| |||||||||    
T  5703240 ctaggggtgttcatgggttgggtcaacccagaaaacccggtcaaatccacccaaa 5703186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 13369239 - 13369292
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||| |||||||    
T  13369239 taggggtgttcatgggttgggtcaacccagaaaacccggtcaaacctacccaaa 13369292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 17205701 - 17205754
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    ||||||||| |||||||||||||||||| ||||| ||| |||||||||||||||    
T  17205701 taggggtgttcatgggttgggtcaacccagaaaatccgatcaaacccacccaaa 17205754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 22417175 - 22417120
Alignment:
Q  173 tactaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    ||||||||||||||||||||||||| |||||  ||||||| ||||||||||||||||    
T  22417175 tactaggggtgtacatgggttgggtaaacccaaaaaaccc-gtcaaacccacccaaa 22417120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 14793931 - 14793877
Alignment:
Q  175 ctaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||||||||||||||||||||||||  ||||  | ||||||||||||||||    
T  14793931 ctaggggtgtacatgggttgggtcaacccaaaaaatacagtcaaacccacccaaa 14793877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 5533258 - 5533313
Alignment:
Q  174 actaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||||| | |||||||||||||||||  |||||| ||||||| |||||||||    
T  5533258 actaggggtggatatgggttgggtcaacccataaaacctggtcaaatccacccaaa 5533313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 20463946 - 20463984
Alignment:
Q  186 catgggttgggtcaacccggaaaacccggtcaaacccac 224  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  20463946 catgggttgggtcaacccagaaaatccggtcaaacccac 20463984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 24934994 - 24935047
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||| |||| ||| ||||||||||||||  |||||||| |||||||||||||||    
T  24934994 taggtgtgttcattggttgggtcaacccataaaacccgatcaaacccacccaaa 24935047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 25683686 - 25683739
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||| |||| ||| ||||||||||||||  |||||||| |||||||||||||||    
T  25683686 taggtgtgttcattggttgggtcaacccaaaaaacccgatcaaacccacccaaa 25683739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 19263544 - 19263599
Alignment:
Q  174 actaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    ||||||||||| ||||||||||||||| || ||||||||||| |||||||||||||    
T  19263544 actaggggtgtccatgggttgggtcaatccagaaaacccggttaaacccacccaaa 19263599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 32830032 - 32829979
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    ||||||| | |||||||||||||||||| ||||| |||||||||||||||||||    
T  32830032 taggggtattcatgggttgggtcaacccagaaaatccggtcaaacccacccaaa 32829979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 28251564 - 28251516
Alignment:
Q  175 ctaggggtgtacatgggttgggtcaacccggaaaacccggtcaaaccca 223  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||||    
T  28251564 ctaggagtgttcatgggttgggtcaacccagaaaacccggtcaaaccca 28251516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 8059029 - 8059081
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||||||||||||||||| |||||  ||||||| ||||||||||||||||    
T  8059029 taggggtgtacatgggttgggtaaacccaaaaaaccc-gtcaaacccacccaaa 8059081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 14949481 - 14949534
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||||  ||||||||||||||||| |||||||||  ||||||||||||||    
T  14949481 taggggtgtttatgggttgggtcaacccagaaaacccgagcaaacccacccaaa 14949534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 14190542 - 14190494
Alignment:
Q  175 ctaggggtgtacatgggttgggtcaacccggaaaacccggtcaaaccca 223  Q
    |||||||||| ||||||||||||||||||  ||| ||||||||||||||    
T  14190542 ctaggggtgttcatgggttgggtcaacccaaaaaccccggtcaaaccca 14190494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 283
Target Start/End: Complemental strand, 31200664 - 31200556
Alignment:
Q  174 actaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtg 273  Q
    |||||||||||||||||||||||| |||||  |||| || |||||||||||||||| ||| ||        ||||||||| |||| | |||||| || ||    
T  31200664 actaggggtgtacatgggttgggtaaaccc-aaaaaacctgtcaaacccacccaaaaaaacccaaaaaagtgggttgggttgggtgattgggtggatatg 31200566  T
Q  274 gttttaaaaa 283  Q
    ||||||||||    
T  31200565 gttttaaaaa 31200556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 283
Target Start/End: Complemental strand, 51251342 - 51251235
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtggt 275  Q
    |||||||||||||||||||||| |||||  |||| ||  ||||||||||||||| ||| ||        ||||||||| |||| | |||||| || ||||    
T  51251342 taggggtgtacatgggttgggtaaacccaaaaaaacccatcaaacccacccaaaaaaacccaaaaaagtgggttgggttgggtgattgggtggatatggt 51251243  T
Q  276 tttaaaaa 283  Q
    ||||||||    
T  51251242 tttaaaaa 51251235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 14939465 - 14939518
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||||  ||||||||||||||||  ||||| ||| |||||||||||||||    
T  14939465 taggggtgtttatgggttgggtcaacctagaaaatccgatcaaacccacccaaa 14939518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 14944709 - 14944762
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||||  ||||||||||||||||  ||||| ||| |||||||||||||||    
T  14944709 taggggtgtttatgggttgggtcaacctagaaaatccgatcaaacccacccaaa 14944762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 28882547 - 28882494
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    ||||||||| |||| ||||| ||||||| | |||| ||||||||||||||||||    
T  28882547 taggggtgttcatgtgttggatcaacccagcaaacgcggtcaaacccacccaaa 28882494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 40485012 - 40484960
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  40485012 taggggtgtacatgggttgggtcaacccaaaaaaccc-gtcaaacccacccaaa 40484960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 4421895 - 4421846
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacc 225  Q
    ||||||||| |||||||||||||||| | ||||| |||||||||||||||    
T  4421895 taggggtgttcatgggttgggtcaactcagaaaatccggtcaaacccacc 4421846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 14634767 - 14634728
Alignment:
Q  174 actaggggtgtacatgggttgggtcaacccggaaaacccg 213  Q
    ||||||||||||||||||||||||||||| | ||||||||    
T  14634767 actaggggtgtacatgggttgggtcaacctgaaaaacccg 14634728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 23927823 - 23927875
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||||||||||||||||| || ||  ||||||| ||||||||||||||||    
T  23927823 taggggtgtacatgggttgggtaaatccaaaaaaccc-gtcaaacccacccaaa 23927875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 34490640 - 34490685
Alignment:
Q  180 ggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacc 225  Q
    ||||| ||| |||||||||||||||| |||||| ||||||||||||    
T  34490640 ggtgtgcataggttgggtcaacccggtaaacccagtcaaacccacc 34490685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 24495743 - 24495795
Alignment:
Q  177 aggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||| ||||||||||||| |||| ||||||| |||||||||||||||||    
T  24495743 aggggtgttcatgggttgggtcgacccagaaaacctggtcaaacccacccaaa 24495795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 283
Target Start/End: Complemental strand, 8770651 - 8770545
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaagaaaaccnnnnnnncgggttgggtcgggtaaatgggtgaatgtggt 275  Q
    |||||||||||||||||||||| |||||  ||||||| |||||||||||||||| ||| ||        ||||||||| |||| | |||||| || ||||    
T  8770651 taggggtgtacatgggttgggtaaacccaaaaaaccc-gtcaaacccacccaaaaaaacccaaaaaagtgggttgggttgggtgattgggtggatatggt 8770553  T
Q  276 tttaaaaa 283  Q
    ||||||||    
T  8770552 tttaaaaa 8770545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 9606568 - 9606518
Alignment:
Q  175 ctaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacc 225  Q
    |||||||||| |||||||||||||||||  |||||| ||||||||||||||    
T  9606568 ctaggggtgttcatgggttgggtcaacctagaaaactcggtcaaacccacc 9606518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 4151520 - 4151466
Alignment:
Q  175 ctaggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||||||||||||||||||||||||||||  |||| || || ||||||| |||||    
T  4151520 ctaggggtgtacatgggttgggtcaacccaaaaaatcccgtaaaacccatccaaa 4151466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 35166024 - 35165971
Alignment:
Q  176 taggggtgtacatgggttgggtcaacccggaaaacccggtcaaacccacccaaa 229  Q
    |||| |||| ||| ||||||||||||||  |||||||| |||||||||||||||    
T  35166024 taggtgtgttcattggttgggtcaacccaaaaaacccgatcaaacccacccaaa 35165971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University