View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20315_low_9 (Length: 444)
Name: NF20315_low_9
Description: NF20315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20315_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 51 - 433
Target Start/End: Original strand, 43196700 - 43197082
Alignment:
| Q |
51 |
cttttgtaatttcaatttattcaatatgaagctttgttttgctctgcatgaaaaaggtcttactttgcttatttctgttcttaataggtaaacagggaaa |
150 |
Q |
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| T |
43196700 |
cttttgtaatttcaatttattcaatatgaagctttgttttgctctgcatgaaaaaggtcttactttgcttatttctgttcttaataggtaaacagggaaa |
43196799 |
T |
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| Q |
151 |
tgatgggtgtcatagaatcactccagcaacaggctgaacagatggaggagagttctgaagaatcaagtgtaaaaagtgatgaaaatctcaagccggatga |
250 |
Q |
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| T |
43196800 |
tgatgggtgtcatagaatcactccagcaacaggctgaacagatggaggagagttctgaagaatcaagtgtaaaaagtgatgaaaatctcaagccggatga |
43196899 |
T |
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| Q |
251 |
ggagacggaggtttcaaagccctgtgattcaagtgaaaaagtcctgaaggaaattaacaagaatgatctgaatcctccacagaagcggaggaaaggtact |
350 |
Q |
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| T |
43196900 |
ggagacggaggtttcaaagccctgtgattcaagtgaaaaagtcttgaaggaaattaacaagaatgatctgaatcctccacagaagcggaggaaaggtact |
43196999 |
T |
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| Q |
351 |
ggtggcaaggctgtggcgaacacggaggaacatattgacgaggtaaacgtaggaagcaaagcaatggctttaaataaggcttt |
433 |
Q |
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| T |
43197000 |
ggtggcaaggctgtggcgaacacggaggaacatattgacgaggtaaacgtaggaagcaaagcaatggctttaaataaggcttt |
43197082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 105 - 386
Target Start/End: Original strand, 19106547 - 19106828
Alignment:
| Q |
105 |
aggtcttactttgcttatttctgttcttaataggtaaacagggaaatgatgggtgtcatagaatcactccagcaacaggctgaacagatggaggagagtt |
204 |
Q |
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| T |
19106547 |
aggtcttattttgattacttctgtttttaacaggttaatagagaaatgatgggtgtcatagaatcactccagctacaggctgattagatggaggatagtt |
19106646 |
T |
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| Q |
205 |
ctgaagaatcaagtgtaaaaagtgatgaaaatctcaagccggatgaggagacggaggtttcaaagccctgtgattcaagtgaaaaagtcctgaaggaaat |
304 |
Q |
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| T |
19106647 |
ttgaagaatcaagtgctaaaggcagtgaaaataccaagttggatgagaagacaaaagtttcgaaaccctgcgattcaagtgaagaagtcttgaaagaagt |
19106746 |
T |
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| Q |
305 |
taacaagaatgatctgaatcctccacagaagcggaggaaaggtactggtggcaaggctgtggcgaacacggaggaacatatt |
386 |
Q |
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| T |
19106747 |
taacgaggttgatttgaatcctccactgaagcggatgaaaggtgatggtggcgaggctgtggtgaacatggacgaacatatt |
19106828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 105 - 366
Target Start/End: Complemental strand, 43190881 - 43190606
Alignment:
| Q |
105 |
aggtcttactttgcttatttctgttctt--aataggtaaacagggaaatgatgggtgtcatagaatcactccagcaacaggctgaaca------------ |
190 |
Q |
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| T |
43190881 |
aggtctaattttgcttatttatgatcttttaacaggttaacagggaaatgatgggtgtgatagaaacactccagcgacaggctgaacaacaggaagaaca |
43190782 |
T |
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| Q |
191 |
gatggaggagagttctgaagaatcaagtgtaaaaagtgatgaaaatctcaagccggatgaggagacggaggtttcaaagccctgtgattcaagtgaaaaa |
290 |
Q |
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| T |
43190781 |
gatggaggagaattccggagaatcaagtgctaagagtgaagaaaatgacaagccggatgaggagaccgaggtctcaaaatcctctgattcgagtgaaaaa |
43190682 |
T |
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| Q |
291 |
gtcctgaaggaaattaacaagaatgatctgaatcctccacagaagcggaggaaaggtactggtggcaaggctgtgg |
366 |
Q |
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| T |
43190681 |
gtcgtggaggaaattaacgaggatgatgtgaatcctccacagaagaagaggaaaggtgatgatgacaaggctgtgg |
43190606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 84 - 190
Target Start/End: Complemental strand, 43188719 - 43188611
Alignment:
| Q |
84 |
ttgttttgctctgcatgaaaaaggtcttactttgcttatttctgttctt--aataggtaaacagggaaatgatgggtgtcatagaatcactccagcaaca |
181 |
Q |
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| T |
43188719 |
ttgttttgctctacataaaagaggtcttattttgcttatttatgatcttttaacaggttaacacggaaatgatgggtgtgatagaatcacttcggcgaca |
43188620 |
T |
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| Q |
182 |
ggctgaaca |
190 |
Q |
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| T |
43188619 |
ggctgaaca |
43188611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 365
Target Start/End: Original strand, 53673278 - 53673333
Alignment:
| Q |
310 |
agaatgatctgaatcctccacagaagcggaggaaaggtactggtggcaaggctgtg |
365 |
Q |
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| T |
53673278 |
agaatgctctgaatcctccactgaagcggacgaaaggtgctggtggcaaggctgtg |
53673333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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