View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20316_high_15 (Length: 446)
Name: NF20316_high_15
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 77 - 431
Target Start/End: Complemental strand, 35723801 - 35723448
Alignment:
| Q |
77 |
cattttccttcttcatataca----ataactcttatcttgttttctactcaactacattnnnnnnnncacaacatatacgtacgtgcgtaaacacaatta |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
35723801 |
cattttccttcttcatatacatacaataactcttatcttgttttctacacaactacattaaaaaaa-cacaacatatacgt----gcgtaaacacaatta |
35723707 |
T |
|
| Q |
173 |
gcaacaacaatcagttacaaataagtaaattaaaccattttaattaatggcggttgtttttacattcaccgccatcttgttaacggcggcgacggtgatt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35723706 |
gcaacaacaatcagttacaaataagtaaattaaaccattttaattaatggcggttgtttttacattcaccgccatcttgttaacggcggcgacggtgatt |
35723607 |
T |
|
| Q |
273 |
gtttccggatctccggcaactctaacgttggaaagagcttttccgacgaaccacggaattgagctaagtcagctgaaagctagagattggttaaggcatc |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
35723606 |
gtttccggatctccggcaactctaacgttggaaagagcttttccgacgaaccacggaattgagcttagtcagctgaaagctagagatttgttaaggcatc |
35723507 |
T |
|
| Q |
373 |
gtagattgcagtcttcttcaaacggtgttgctgattttgctgttcatggtacctttgat |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35723506 |
gtagattgcagtcttcttcaaacggtgttgctgattttgctgttcatggtacctttgat |
35723448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University