View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_high_19 (Length: 414)
Name: NF20316_high_19
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 61 - 396
Target Start/End: Original strand, 40482374 - 40482709
Alignment:
| Q |
61 |
ctataattgttgaatgtatcaaaattacataaatacccttgagcatattatctactagtaatttgatagactaaactgacaaataaaagacgcattaaac |
160 |
Q |
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| T |
40482374 |
ctataattgttgaatgtatcaaaattacataaatacccttgagcatattatctactagtaatttgatagactaaactgacaaataaaagacacattaaac |
40482473 |
T |
|
| Q |
161 |
gatcaaactaaccagtggatacacttataagaatcaaactaaataactaggagacgcattttaaggatgtttcgtaattttggttaatttaggattgtag |
260 |
Q |
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| T |
40482474 |
gatcaaattaactagtggatacacttttaagaatcaaactaaataactacgagacgctttttaaggatgttttgtaattttggttaattagggattgtag |
40482573 |
T |
|
| Q |
261 |
ggacaatatctgacacattcaaggaccaaagtggccttttaaacataaacaaacagactcatatgtacctgaggaagaggcaatgcggcaataaagtcta |
360 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40482574 |
ggacaatatctgacacattcaaggaccaaagcggccttttaaacataaacaaacagactcataggtacctgaggaagaggcaatgcggcaataaagtcta |
40482673 |
T |
|
| Q |
361 |
accaaaaacccttgctgaagtacctaagagcaatct |
396 |
Q |
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| T |
40482674 |
accaaaaacccttgctgaagtacctaagagcaatct |
40482709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 61 - 396
Target Start/End: Original strand, 40513048 - 40513383
Alignment:
| Q |
61 |
ctataattgttgaatgtatcaaaattacataaatacccttgagcatattatctactagtaatttgatagactaaactgacaaataaaagacgcattaaac |
160 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40513048 |
ctataattgttgaatgtatcaaaattacataaatacccttgagcatattatctactagtaatttgatagactaaactgacaaataaaagacacattaaac |
40513147 |
T |
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| Q |
161 |
gatcaaactaaccagtggatacacttataagaatcaaactaaataactaggagacgcattttaaggatgtttcgtaattttggttaatttaggattgtag |
260 |
Q |
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||||||| |||| ||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||| |
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| T |
40513148 |
gatcaaattaactagtggatacacttttaagaatcaaactaaataactacgagacgctttttaaggatgttttgtaattttggttaattagggattgtag |
40513247 |
T |
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| Q |
261 |
ggacaatatctgacacattcaaggaccaaagtggccttttaaacataaacaaacagactcatatgtacctgaggaagaggcaatgcggcaataaagtcta |
360 |
Q |
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| T |
40513248 |
ggacaatatctgacacattcaaggaccaaagcggccttttaaacataaacaaacagactcataggtacctgaggaagaggcaatgcggcaataaagtcta |
40513347 |
T |
|
| Q |
361 |
accaaaaacccttgctgaagtacctaagagcaatct |
396 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
40513348 |
accaaaaacccttgctgaagtacctaagagcaatct |
40513383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 40482344 - 40482373
Alignment:
| Q |
13 |
aatatacacatttcggttcgagtcctaacc |
42 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
40482344 |
aatatacacatttcggttcgagtcctaacc |
40482373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 40513018 - 40513047
Alignment:
| Q |
13 |
aatatacacatttcggttcgagtcctaacc |
42 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
40513018 |
aatatacacatttcggttcgagtcctaacc |
40513047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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