View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20316_high_22 (Length: 361)

Name: NF20316_high_22
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20316_high_22
NF20316_high_22
[»] chr6 (6 HSPs)
chr6 (138-187)||(26047414-26047463)
chr6 (138-187)||(26049439-26049488)
chr6 (138-187)||(26065723-26065772)
chr6 (138-187)||(26070608-26070657)
chr6 (138-187)||(26085692-26085741)
chr6 (138-187)||(25524964-25525013)
[»] chr5 (1 HSPs)
chr5 (303-343)||(18594996-18595036)
[»] scaffold0076 (1 HSPs)
scaffold0076 (303-343)||(6669-6709)
[»] chr8 (1 HSPs)
chr8 (303-343)||(17088678-17088717)


Alignment Details
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 26047463 - 26047414
Alignment:
Q  138 aaaacacactgctatcaatgacattaagcaagacatttattggttccaat 187  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  26047463 aaaacacactgctatcaatgatattaagcatgacatttattggttccaat 26047414  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 26049488 - 26049439
Alignment:
Q  138 aaaacacactgctatcaatgacattaagcaagacatttattggttccaat 187  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  26049488 aaaacacactgctatcaatgatattaagcatgacatttattggttccaat 26049439  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 26065772 - 26065723
Alignment:
Q  138 aaaacacactgctatcaatgacattaagcaagacatttattggttccaat 187  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  26065772 aaaacacactgctatcaatgatattaagcatgacatttattggttccaat 26065723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 26070657 - 26070608
Alignment:
Q  138 aaaacacactgctatcaatgacattaagcaagacatttattggttccaat 187  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  26070657 aaaacacactgctatcaatgatattaagcatgacatttattggttccaat 26070608  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 26085741 - 26085692
Alignment:
Q  138 aaaacacactgctatcaatgacattaagcaagacatttattggttccaat 187  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  26085741 aaaacacactgctatcaatgatattaagcatgacatttattggttccaat 26085692  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 25525013 - 25524964
Alignment:
Q  138 aaaacacactgctatcaatgacattaagcaagacatttattggttccaat 187  Q
    |||||||| |||||||| |||||||||||| |||||||||||||||||||    
T  25525013 aaaacacattgctatcagtgacattaagcatgacatttattggttccaat 25524964  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 18595036 - 18594996
Alignment:
Q  303 cttagctgtcattgaaattttgtataactagacaccgatac 343  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18595036 cttagctgtcattgaaattttgtataactagacaccgatac 18594996  T

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Target: scaffold0076 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 6669 - 6709
Alignment:
Q  303 cttagctgtcattgaaattttgtataactagacaccgatac 343  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  6669 cttagctgtcattgaaattttgtataactaaccaccgatac 6709  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 17088678 - 17088717
Alignment:
Q  303 cttagctgtcattgaaattttgtataactagacaccgatac 343  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  17088678 cttagctgtcattgaaa-tttgtataactagacactgatac 17088717  T

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