View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20316_high_3 (Length: 646)

Name: NF20316_high_3
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20316_high_3
NF20316_high_3
[»] chr7 (1 HSPs)
chr7 (10-632)||(6488542-6489164)
[»] chr6 (3 HSPs)
chr6 (33-218)||(6328325-6328510)
chr6 (33-218)||(6335883-6336068)
chr6 (33-218)||(6350868-6351053)


Alignment Details
Target: chr7 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 10 - 632
Target Start/End: Complemental strand, 6489164 - 6488542
Alignment:
Q  10 agagagatgaaataaagaagagattaccgaagatggaggaagcgatctgctgacatcaacggtgtgaagaaaacctttgagattgcgatcacagccagca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6489164 agagagatgaaataaagaagagattaccgaagatggaggaagcgatctgctgacatcaacggtgtgaagaaaacctttgagattgcgatcacagccagca 6489065  T
Q  110 ttatcatgagcatcttcaacgccataaaccagcattccacgtaaaccggcttcattcaacccggcaatactttttccagcggtgatagcatcttctccag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6489064 ttatcatgagcatcttcaacgccataaaccagcattccacgtaaacctgcttcattcaacccggcaatactttttccagcggtgatagcatcttctccgg 6488965  T
Q  210 cacaaaaataatcgaaaaaagtggcacgtgtggtagccatagcaaggttacttaatggattattggtctgcatgagatcagacctcaacaaccatgtacc 309  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6488964 cacaaaaatgatcgaaaaaagtggcacgtgtggtagccatagcaaggttacttaatggattattggtctgcatgagatcagacctcaacaaccatgtacc 6488865  T
Q  310 gaggtcaaccattggctcgaccgcggtagcatggaggacagcagttgatttgagaagttttttggttgggacgtgcgaaaagagtttttcgacgtcgtgg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6488864 gaggtcaaccattggctcgaccgcggtagcatggaggacagcagttgatttgagaagttttttggttgggacgtgcgaaaagagtttttcgacgtcgtgg 6488765  T
Q  410 aagtcgagattggcgtcgggagggaggatggttgttaccgatgatggcagtttttggtctaaaatattagacgcaggagcgacagcgggcgaggtgaggg 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6488764 aagtcgagattggcgtcgggagggaggatggttgttaccgatgatggcagtttttggtctaaaatattagacgcaggagcgacagcgggcgaggtgaggg 6488665  T
Q  510 caggttggaacggttttgtggcagtgttgtaacggagtttccttaggattcttggtgggataactctggtggccatcaaccggtcaaagatgatttatat 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6488664 caggttggaacggttttgtggcagtgttgtaacggagtttccttaggattcttggtgggataactctggtggccatcaaccggtcaaagatgatttatat 6488565  T
Q  610 gatataaataagaagatatatgt 632  Q
    |||||||| ||||||||||||||    
T  6488564 gatataaacaagaagatatatgt 6488542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 33 - 218
Target Start/End: Original strand, 6328325 - 6328510
Alignment:
Q  33 ttaccgaagatggaggaagcgatctgctgacatcaacggtgtgaagaaaacctttgagattgcgatcacagccagcattatcatgagcatcttcaacgcc 132  Q
    |||| ||||| |||||||| ||| |||| |||||||| || |||||||| ||||| ||||| |||||||| ||| |||| ||||| ||||||||||| ||    
T  6328325 ttacagaagaaggaggaagtgatttgctaacatcaacagtatgaagaaaccctttaagattacgatcacaaccatcattctcatgtgcatcttcaacacc 6328424  T
Q  133 ataaaccagcattccacgtaaaccggcttcattcaacccggc-aatactttttccagcggtgatagcatcttctccagcacaaaaat 218  Q
    | |||| ||||| |||||||| || |||||||| |||    |  ||||| |||||||| || |||||||||||||||||||||||||    
T  6328425 aaaaacaagcatgccacgtaagccagcttcatt-aacagaccttatactctttccagcagtaatagcatcttctccagcacaaaaat 6328510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 33 - 218
Target Start/End: Original strand, 6335883 - 6336068
Alignment:
Q  33 ttaccgaagatggaggaagcgatctgctgacatcaacggtgtgaagaaaacctttgagattgcgatcacagccagcattatcatgagcatcttcaacgcc 132  Q
    |||| ||||| |||||||| ||| |||| |||||||| || |||||||| ||||| ||||| |||||||| ||| |||| ||||| ||||||||||| ||    
T  6335883 ttacagaagaaggaggaagtgatttgctaacatcaacagtatgaagaaaccctttaagattacgatcacaaccatcattctcatgtgcatcttcaacacc 6335982  T
Q  133 ataaaccagcattccacgtaaaccggcttcattcaacccggc-aatactttttccagcggtgatagcatcttctccagcacaaaaat 218  Q
    | |||| ||||| |||||||| || |||||||| |||    |  ||||| |||||||| || |||||||||||||||||||||||||    
T  6335983 aaaaacaagcatgccacgtaagccagcttcatt-aacagaccttatactctttccagcagtaatagcatcttctccagcacaaaaat 6336068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 33 - 218
Target Start/End: Original strand, 6350868 - 6351053
Alignment:
Q  33 ttaccgaagatggaggaagcgatctgctgacatcaacggtgtgaagaaaacctttgagattgcgatcacagccagcattatcatgagcatcttcaacgcc 132  Q
    |||| ||||| |||||||| ||| |||| |||||||| || |||||||| ||||| ||||| |||||||| ||| |||| ||||| ||||||||||| ||    
T  6350868 ttacagaagaaggaggaagtgatttgctaacatcaacagtatgaagaaaccctttaagattacgatcacaaccatcattctcatgtgcatcttcaacacc 6350967  T
Q  133 ataaaccagcattccacgtaaaccggcttcattcaacccggc-aatactttttccagcggtgatagcatcttctccagcacaaaaat 218  Q
    | |||| ||||| |||||||| || |||||||| |||    |  ||||| |||||||| || |||||||||||||||||||||||||    
T  6350968 aaaaacaagcatgccacgtaagccagcttcatt-aacagaccttatactctttccagcagtaatagcatcttctccagcacaaaaat 6351053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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