View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_high_30 (Length: 301)
Name: NF20316_high_30
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 279
Target Start/End: Original strand, 17932323 - 17932587
Alignment:
| Q |
10 |
gcagagatgtccaaagaagaaaagaacaaaatttctcaccgctccaaatctcttgcacttgtgaaatcacattttgctgaagctggatatacctttcaaa |
109 |
Q |
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| T |
17932323 |
gcagagatgtccaaagaagaaaagaacaaaatttctcaccgctccaaatctcttgcacttgtgaaatcacattttgctgaagctggatatacctttcaaa |
17932422 |
T |
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| Q |
110 |
tctgaatgatgtgtggttgactataagtcagaaattctatactagacattccttgaattttggaatcggttaaatgtaagaatgttcgattaaagtttgc |
209 |
Q |
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| T |
17932423 |
tctgaatgatgtgtggttgactataagtcagaaattctatactagacattccttgaattttggaatcggttaaacgtaagaatgttcgattaaagtttgc |
17932522 |
T |
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| Q |
210 |
aaacttgagtttgattaaatctcattttgcatacttaagctaggttaaaaatgaatttgttccaacatat |
279 |
Q |
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| T |
17932523 |
aaacttgagtttgattaaatctcattttgcatacttaa-----gttaaaaatgaatttgttccaacatat |
17932587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 17935618 - 17935693
Alignment:
| Q |
40 |
atttctcaccgctccaaatctcttgcacttgtgaaatcacattttgctgaagctggatatacctttcaaatctgaa |
115 |
Q |
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| T |
17935618 |
atttctcaccgctccaaatctcttgcacttgtgaaatcacattttgctgaagctggatatacctttcaaatctgaa |
17935693 |
T |
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