View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20316_high_33 (Length: 278)
Name: NF20316_high_33
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_high_33 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 29156555 - 29156832
Alignment:
| Q |
1 |
ttgatgataatcctaattaagttattagaatttggccacctttattataaattccaaactttcgaatataattctcacttagatacacaccattgattta |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29156555 |
ttgaagataatcctaattaagttattagaatttggccacctttattataaattccaacctttcgaatataattctcacttagatacacaccattgattta |
29156654 |
T |
|
| Q |
101 |
ttgtctcataaaccaactggttcaacannnnnnnnnnnnctcatctatcaataataactttcggcttaaagatacgatagaatatatttattctctttcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
29156655 |
ttgtctcataaaccaactggttcaacattttttctttttctcatctatcaattctaactttcggcttaaagatacggtagaacatatttattctctttcc |
29156754 |
T |
|
| Q |
201 |
actacttgcagttattattgtctgacttagtagataataaagttatttctaaccaaagtttttgtcatatttatttat |
278 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29156755 |
actacttgcagttattattttctgacttagtagataataaagttatttctaaccaaagtttttgtcatatttatttat |
29156832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University