View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_high_34 (Length: 278)
Name: NF20316_high_34
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 25 - 263
Target Start/End: Complemental strand, 41866689 - 41866445
Alignment:
| Q |
25 |
cttgtgataaccgttgggaatagatcattcccatcctttcatgctgtaagaaattggttttgccggattcagacatagcagaggctatgactttgaaact |
124 |
Q |
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| T |
41866689 |
cttgtgataaccgttgggaatagatcattcccatcctttcatgctgtaagaaattggttttgccggattcagacatagcagaggctatggctttgaaact |
41866590 |
T |
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| Q |
125 |
tggcttagagtttgcaagagatatgcttttcttaaaacataatagctgaatcagactccctcaacactatcacaact------gaccaacaccatggtca |
218 |
Q |
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| T |
41866589 |
tggcttagagtttgcaagagatatgcttttcttaaaacataatagctgaatcagactccctcaacactatcacaactcttagggaccaacaccatggtca |
41866490 |
T |
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| Q |
219 |
atattacataggtcccattatggatgactgtaaattgttattttc |
263 |
Q |
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| T |
41866489 |
atcttacataggtcccattctggatgactgtaaattgttattttc |
41866445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 66 - 263
Target Start/End: Complemental strand, 20204250 - 20204054
Alignment:
| Q |
66 |
tgctgtaagaaattggttttgccggattcagacatagcagaggctatgactttgaaacttggcttagagtttgcaagagatatgcttttcttaaaacata |
165 |
Q |
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| T |
20204250 |
tgctgtaagagattggttttaccggattcagacatagcagagactatgacattgaaacttggcttgaagtttgcaagggatatgcttttctt-aaaccta |
20204152 |
T |
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| Q |
166 |
atagctgaatcagactccctcaacactatcacaact------gaccaacaccatggtcaatattacataggtcccattatggatgactgtaaattgttat |
259 |
Q |
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| T |
20204151 |
agacct------gactctctcaacactatcacagctcttagggaccagcaccatggtcaatcttacataggtctcattttggatgacggtaaattgttat |
20204058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 66 - 263
Target Start/End: Complemental strand, 22098273 - 22098077
Alignment:
| Q |
66 |
tgctgtaagaaattggttttgccggattcagacatagcagaggctatgactttgaaacttggcttagagtttgcaagagatatgcttttcttaaaacata |
165 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||||||||||| |||| || |
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| T |
22098273 |
tgctgtaagagattggttttaccggattcagacatagcagagactatgacattgaaacttggcttgaagtttgcaagggatatgcttttctt-aaaccta |
22098175 |
T |
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| Q |
166 |
atagctgaatcagactccctcaacactatcacaact------gaccaacaccatggtcaatattacataggtcccattatggatgactgtaaattgttat |
259 |
Q |
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| T |
22098174 |
agacct------gactctctcaacactatcacagctcttagggaccagcaccatggtcaatcttacataggtctcattttggatgacggtaaattgttat |
22098081 |
T |
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