View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20316_high_39 (Length: 230)
Name: NF20316_high_39
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_high_39 |
 | |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 89925 - 89726
Alignment:
| Q |
21 |
cttgctgatcccccgttgtcacgccgctagtggaatccattaaaattgtcaacctcctagcttttctgatgaagtctctgaaagagaaacaaatagatta |
120 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
89925 |
cttgctgatcctccgttgtcgcgccgctagtggaatccattaaaattgtcaacctcctagcttttctgatgaagtctctgaaagagaaacaaatagatta |
89826 |
T |
|
| Q |
121 |
ttatcatatatcataaatcaatttctagtagaaagatactaaattttattcatacttacctgaatgtttcatctctaatgcttctcctgcctatgcttct |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||| |
|
|
| T |
89825 |
ttatcatatatcataaatcaatttctagtagaaagatactaaattttattcattcttacctgaatgtttcatctctaatgtttctcctgccaatgtttct |
89726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 44 - 211
Target Start/End: Complemental strand, 97742 - 97574
Alignment:
| Q |
44 |
ccgctagtggaatccattaaaattgtcaacctcctagcttttctgatgaagtctctgaaagagaaacaaatagattattatcatatatcataaatcaatt |
143 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||||| | |||||| |||| || || |||||||| ||||||| |
|
|
| T |
97742 |
ccgctagtggactctattaaaattgtcaacctcctagcctttcagatgaagtctctgaaagagcatcaaatatattaataacacatatcatatatcaatt |
97643 |
T |
|
| Q |
144 |
tctagtagaaagatactaaattttattcatacttacctgaatgtttcatct-ctaatgcttctcctgcc |
211 |
Q |
| |
|
|||||||||||||| || |||||||||||| | |||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
97642 |
tctagtagaaagattctcaattttattcattcataccagaatgtttcatctgctaatgtttctcctgcc |
97574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 40876358 - 40876557
Alignment:
| Q |
21 |
cttgctgatcccccgttgtcacgccgctagtggaatccattaaaattgtcaacctcctagcttttctgatgaagtctctgaaagagaaacaaatagatta |
120 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40876358 |
cttgctgatcctccgttgtcgcgccgctagtggaatccattaaaattgtcaacctcctagcttttctgatgaagtctctgaaagagaaacaaatagatta |
40876457 |
T |
|
| Q |
121 |
ttatcatatatcataaatcaatttctagtagaaagatactaaattttattcatacttacctgaatgtttcatctctaatgcttctcctgcctatgcttct |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||| |
|
|
| T |
40876458 |
ttatcatatatcataaatcaatttctagtagaaagatactaaattttattcattcttacctgaatgtttcatctctaatgtttctcctgccaatgtttct |
40876557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 44 - 211
Target Start/End: Original strand, 40868540 - 40868708
Alignment:
| Q |
44 |
ccgctagtggaatccattaaaattgtcaacctcctagcttttctgatgaagtctctgaaagagaaacaaatagattattatcatatatcataaatcaatt |
143 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||||| | |||||| |||| || || |||||||| ||||||| |
|
|
| T |
40868540 |
ccgctagtggactctattaaaattgtcaacctcctagcctttcagatgaagtctctgaaagagcatcaaatatattaataacacatatcatatatcaatt |
40868639 |
T |
|
| Q |
144 |
tctagtagaaagatactaaattttattcatacttacctgaatgtttcatct-ctaatgcttctcctgcc |
211 |
Q |
| |
|
|||||||||||||| || |||||||||||| | |||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
40868640 |
tctagtagaaagattctcaattttattcattcataccagaatgtttcatctgctaatgtttctcctgcc |
40868708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University