View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_high_43 (Length: 212)
Name: NF20316_high_43
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_high_43 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 24908983 - 24908794
Alignment:
| Q |
18 |
atcacccagaagatcatctagttac-ttgatacttaacattaatggtgattaggacattgttgttaacgttgacgttgatgttgaccacgcaaaggatca |
116 |
Q |
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| T |
24908983 |
atcacccagaagatcatttagttacattaatacttaacattaatggtaattaggatattgttgttaacgttga------tgttgaccacgcagaggatca |
24908890 |
T |
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| Q |
117 |
tcgtttgataggcggtgaattttgtattgatgatcatacaattaagatgtattagtcacattaaaattattttatttcaaattattaagatcatac |
212 |
Q |
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| T |
24908889 |
tcgtttgataggcggtgaattttgtattgatgatcatacaattaagatgtattagtcacattaaaattattttatttcaaattattaagatcatac |
24908794 |
T |
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