View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_high_5 (Length: 525)
Name: NF20316_high_5
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 16 - 510
Target Start/End: Complemental strand, 25798497 - 25798003
Alignment:
| Q |
16 |
atcgtggatgtggcgttgctccagaaagtggtgataatttagatggaaaaaatagtgatgaaggtggaagaaacaatagaaatatcaatagattgagaaa |
115 |
Q |
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| T |
25798497 |
atcgtggatgtggcgttgctccagaaagtggtgataatttagatggaaaaaatagtgatgaaggtggaagaaacaatagaaatatcaatagattgagaaa |
25798398 |
T |
|
| Q |
116 |
atttattttctcacttccttctgcatttgtagtctttgtgttggggattgttttggtttttataagaaaacatgaagttgtcaatgaaattaaatttgga |
215 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25798397 |
gattattttttcacttccttctgcatttgtagtctttgtgttggggattgttttggtttttataagaaaacatgaagttgtcaatgaaattaaatttgga |
25798298 |
T |
|
| Q |
216 |
ccaacttcaatagaattggtgaaattcactaaacatgcatggaagaaaggttttgtcaaaggtgcaattcctcaacttccattgtcaattttgaactctg |
315 |
Q |
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| T |
25798297 |
ccaacttcaatagaattggtgaaattcactaaacatgcatggaagaaaggttttgtcaaaggtgcaattcctcaacttccattgtcaattttgaactctg |
25798198 |
T |
|
| Q |
316 |
tcatagctgtttgtaagttatcaacagatctttttccagaaaaggaattttcagttacatcaatttcagtgacagttggactaatgaatttgatcggttg |
415 |
Q |
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| T |
25798197 |
tcatagctgtttgtaagttatcaacagatctttttccagaaaaggaattttcagttacttcaatttcagtgacagttggactaatgaatttgatcggttg |
25798098 |
T |
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| Q |
416 |
ttggtttggttgtgtgccaacttgtcatggtgccggtggactcgcaggacaatataaattcggtggaagaagtggtgggtgtgtggcacttcttg |
510 |
Q |
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| T |
25798097 |
ttggtttggttgtgtgccaacttgtcatggtgccggtggactcgcaggacaatataaatttggtggaagaagtggagggtgtgtggcacttcttg |
25798003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 199 - 510
Target Start/End: Complemental strand, 49993471 - 49993160
Alignment:
| Q |
199 |
atgaaattaaatttggaccaacttcaatagaattggtgaaattcactaaacatgcatggaagaaaggttttgtcaaaggtgcaattcctcaacttccatt |
298 |
Q |
| |
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||||||||||||||||||| || ||||| || |||||||| |||||||||||||||| |||||||| | || ||| | ||||| ||||| || || |
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| T |
49993471 |
atgaaattaaatttggaccttctaatatagagttagtgaaattttctaaacatgcatggaaacaaggttttataaagggtactattccacaactaccctt |
49993372 |
T |
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| Q |
299 |
gtcaattttgaactctgtcatagctgtttgtaagttatcaacagatctttttccagaaaaggaattttcagttacatcaatttcagtgacagttggacta |
398 |
Q |
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| T |
49993371 |
gtcaattttgaactcggtgatagctgtttgcaaactatcctctgatttatttccaaccaaggacttttcagtaacttcactttcagtgacagttgggtta |
49993272 |
T |
|
| Q |
399 |
atgaatttgatcggttgttggtttggttgtgtgccaacttgtcatggtgccggtggactcgcaggacaatataaattcggtggaagaagtggtgggtgtg |
498 |
Q |
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| T |
49993271 |
atgaatcttttgggtggttggtttggtgctatgccatgctgtcatggtgctggaggattagcaggacagtataaatttggtgggaggagtggagggtgtg |
49993172 |
T |
|
| Q |
499 |
tggcacttcttg |
510 |
Q |
| |
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||||| |||||| |
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| T |
49993171 |
tggcaattcttg |
49993160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 118 - 510
Target Start/End: Original strand, 1807817 - 1808209
Alignment:
| Q |
118 |
ttattttctcacttccttctgcatttgtagtctttgtgttggggattgttttggtttttataagaaaacatgaagttgtcaatgaaattaaatttggacc |
217 |
Q |
| |
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||||||| |||||||||||||| ||| |||||||||| ||||| || ||||||||||||||||||| | ||||||||| ||||||||||||||||||| |
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| T |
1807817 |
ttattttttcacttccttctgcttttatagtctttgtattgggaatagttttggtttttataagaagaagtgaagttgtgcatgaaattaaatttggacc |
1807916 |
T |
|
| Q |
218 |
aacttcaatagaattggtgaaattcactaaacatgcatggaagaaaggttttgtcaaaggtgcaattcctcaacttccattgtcaattttgaactctgtc |
317 |
Q |
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| T |
1807917 |
ctctaaaatagaagtaatgaaattcactaaagaaaattggaagaaaggttttattaaaggtgcaattccacaacttccattgtcaatgttgaactcagtg |
1808016 |
T |
|
| Q |
318 |
atagctgtttgtaagttatcaacagatctttttccagaaaaggaattttcagttacatcaatttcagtgacagttggactaatgaatttgatcggttgtt |
417 |
Q |
| |
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|||||||||||||| ||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||| || |
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| T |
1808017 |
atagctgtttgtaaattatcaacagatcttttccctgaaagggaattttcagttacatcaatttcagtgacagttggactaatgaatttagttggttctt |
1808116 |
T |
|
| Q |
418 |
ggtttggttgtgtgccaacttgtcatggtgccggtggactcgcaggacaatataaattcggtggaagaagtggtgggtgtgtggcacttcttg |
510 |
Q |
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| T |
1808117 |
ggtttggtgctgtgccaacttgtcatggtgctggaggactagcaggacagtataaatttggaggaaggagtggagggtgtgttgcacttcttg |
1808209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 199 - 510
Target Start/End: Original strand, 1875502 - 1875813
Alignment:
| Q |
199 |
atgaaattaaatttggaccaacttcaatagaattggtgaaattcactaaacatgcatggaagaaaggttttgtcaaaggtgcaattcctcaacttccatt |
298 |
Q |
| |
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|||||||||| |||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||| || |
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| T |
1875502 |
atgaaattaagtttggaccctcttcaatagaagtggtgaaattcactaaacatgcttggaagaaaggttttatcaaaggtacaattcctcaacttccttt |
1875601 |
T |
|
| Q |
299 |
gtcaattttgaactctgtcatagctgtttgtaagttatcaacagatctttttccagaaaaggaattttcagttacatcaatttcagtgacagttggacta |
398 |
Q |
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| |||| ||||||||||| ||||||||||||||||| |||| ||| | ||||| |||||||| |||||||| || ||| |||||||||||||||| | |
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| T |
1875602 |
gacaatcttgaactctgtgatagctgtttgtaagttgtcaaaggatttgtttcctgaaaaggacttttcagtcacttcactttcagtgacagttgggttg |
1875701 |
T |
|
| Q |
399 |
atgaatttgatcggttgttggtttggttgtgtgccaacttgtcatggtgccggtggactcgcaggacaatataaattcggtggaagaagtggtgggtgtg |
498 |
Q |
| |
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||||||||| | ||||||||||||||| ||||| |||| |||||||| |||||||| |||||||| |||||||| |||||||| ||||| ||||||| |
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| T |
1875702 |
atgaatttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttggtggaaggagtggagggtgtg |
1875801 |
T |
|
| Q |
499 |
tggcacttcttg |
510 |
Q |
| |
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|||||||||||| |
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|
| T |
1875802 |
tggcacttcttg |
1875813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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