View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20316_low_1 (Length: 730)

Name: NF20316_low_1
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20316_low_1
NF20316_low_1
[»] chr2 (8 HSPs)
chr2 (279-716)||(41470389-41470820)
chr2 (284-707)||(40751535-40751958)
chr2 (279-707)||(41477280-41477708)
chr2 (279-707)||(41484286-41484714)
chr2 (82-191)||(40752684-40752793)
chr2 (82-144)||(41471511-41471573)
chr2 (82-144)||(41478399-41478461)
chr2 (82-174)||(41485577-41485669)
[»] chr4 (6 HSPs)
chr4 (279-710)||(16408003-16408434)
chr4 (17-227)||(16407739-16407951)
chr4 (471-602)||(52481059-52481190)
chr4 (279-438)||(52481190-52481349)
chr4 (626-710)||(52472307-52472391)
chr4 (77-171)||(52481588-52481682)


Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 279 - 716
Target Start/End: Complemental strand, 41470820 - 41470389
Alignment:
Q  279 tgagaaagatacatacacttattaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttgaagatcttccac 378  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |  |||    
T  41470820 tgagaaagatacatacacttatcaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgcttgttgaggatgtatcac 41470721  T
Q  379 gccctccaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttatcatctagatcagtctctccaatgtgactcattacctgg 478  Q
    ||||||||||||||||| |||||  |||||||||||| ||||||| |||||||||||| | || |||||||||||||||| |||||||||||||||||||    
T  41470720 gccctccaattcctctttctttttatgcagctccattttgattgcctccaattttttcatctcttctagatcagtctctcgaatgtgactcattacctgg 41470621  T
Q  479 agagctcctttcagctgttcaatttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctt 578  Q
    ||||||||||||||| ||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41470620 agagctcctttcagccgttc------caattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctt 41470527  T
Q  579 tctgcatcatccaaccaaaagagttctcaaaacttaagtttgatacagtaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatgc 678  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41470526 tctgcatcatccaaccaaaagagttctcaaaacttaagtttgatacattaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatgc 41470427  T
Q  679 tcttcggccaaatacatcattttttcatcggctctgtg 716  Q
    |||||||||||||||||||||||||||||||| |||||    
T  41470426 tcttcggccaaatacatcattttttcatcggccctgtg 41470389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 284 - 707
Target Start/End: Complemental strand, 40751958 - 40751535
Alignment:
Q  284 aagatacatacacttattaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttgaagatcttccacgccct 383  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||  ||    
T  40751958 aagatacatacacttattaactttttgcgggcatcttgcaattcgtcattagttttgcgttcctgaacaaccagtgtttgttgaagatcttccacgttct 40751859  T
Q  384 ccaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttatcatctagatcagtctctccaatgtgactcattacctggagagc 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||| |||    
T  40751858 ccaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttctcatctggatcagtctctccaatgtgattcattacctggaaagc 40751759  T
Q  484 tcctttcagctgttcaatttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctttctgc 583  Q
    ||||||||||||||| || ||||||||||||| |||||||||| | || |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40751758 tcctttcagctgttctatctccaattccaatgcttgttttgcatccagtcctctctccaggtcatgaattttcttgtgaagtttctccttttctttctgc 40751659  T
Q  584 atcatccaaccaaaagagttctcaaaacttaagtttgataca-gtaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatgctctt 682  Q
    | ||||||||||||||||| |||||||| ||||| | ||||| | ||||||| |||| ||||| ||||| ||||||| |||||| |||||||||| ||||    
T  40751658 aacatccaaccaaaagagtcctcaaaacctaagtat-atacatgaaactgaattaaaaactgtcgataataggaaaatgaaatgcgtgccttatgttctt 40751560  T
Q  683 cggccaaatacatcattttttcatc 707  Q
    | |||||||||||||||||||||||    
T  40751559 ccgccaaatacatcattttttcatc 40751535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 279 - 707
Target Start/End: Complemental strand, 41477708 - 41477280
Alignment:
Q  279 tgagaaagatacatacacttattaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttgaagatcttccac 378  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41477708 tgagaaagatacatacacttatcaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttgaagatcttccac 41477609  T
Q  379 gccctccaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttatcatctagatcagtctctccaatgtgactcattacctgg 478  Q
    ||| |||||||||||||| |||||||||||||||||| ||||| | |||| ||||||||| || |||||||||||||||||||||||| |||||||||||    
T  41477608 gccttccaattcctcttctttttcctgcagctccattttgatttcctccagttttttcttctcttctagatcagtctctccaatgtgattcattacctgg 41477509  T
Q  479 agagctcctttcagctgttcaatttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctt 578  Q
    | ||||||||||||| |||| || ||||| ||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  41477508 aaagctcctttcagccgttctatctccaactccaatgcttgttttgcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctccttttctt 41477409  T
Q  579 tctgcatcatccaaccaaaagagttctcaaaacttaagtttgataca-gtaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatg 677  Q
    |||||| ||||||||||||||||| ||||||||| |||| | ||| | || |||||| |||| ||||||||||||||||||  |||||   |||||||||    
T  41477408 tctgcaacatccaaccaaaagagtcctcaaaactgaagtat-ataaatgttactgaattaaaaactgtagataaaaggaaagtgaaatacttgccttatg 41477310  T
Q  678 ctcttcggccaaatacatcattttttcatc 707  Q
     ||||| |||||| ||||||||||||||||    
T  41477309 ttcttcagccaaagacatcattttttcatc 41477280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 279 - 707
Target Start/End: Complemental strand, 41484714 - 41484286
Alignment:
Q  279 tgagaaagatacatacacttattaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttgaagatcttccac 378  Q
    |||| ||||||||||||  |||||| |||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||    
T  41484714 tgaggaagatacatacagctattaactttttgcgggcatcttgcaattcgtcattagttttgcgctcctgaactactagtgtttgttgaagatcttccac 41484615  T
Q  379 gccctccaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttatcatctagatcagtctctccaatgtgactcattacctgg 478  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||    
T  41484614 accctctaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttctcatctatatcagtctctccaatgtgattcattacctgg 41484515  T
Q  479 agagctcctttcagctgttcaatttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctt 578  Q
    | ||||||||| ||| |||| || |||||||||||||  ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41484514 aaagctccttttagccgttctatctccaattccaatgcctgtttagcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctctttttctt 41484415  T
Q  579 tctgcatcatccaaccaaaagagttctcaaaacttaagtttgataca-gtaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatg 677  Q
    |||||| ||||||||||||||||| || ||||||||||| | ||||| | ||||||| |||| ||||||| ||| ||||||| |||| ||||||||||||    
T  41484414 tctgcaacatccaaccaaaagagtccttaaaacttaagtat-atacatgcaactgaattaaaaactgtaggtaataggaaaatgaaaagtgtgccttatg 41484316  T
Q  678 ctcttcggccaaatacatcattttttcatc 707  Q
     ||||| ||||| |||||||||||||||||    
T  41484315 ttcttctgccaagtacatcattttttcatc 41484286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 40752793 - 40752684
Alignment:
Q  82 ttctcattcacttcatcagaaaactttctcttagctgcttcctcaaatggcttaatatcaagtctaaccatcattttcccagcaattatgacttgattgg 181  Q
    |||||||||| |||||||||||  ||||||||||||||||||  ||||||||||||||||| |  | ||||| ||||| ||| |||||||||||||  ||    
T  40752793 ttctcattcatttcatcagaaatttttctcttagctgcttccagaaatggcttaatatcaacttcacccatccttttcacagaaattatgacttgagcgg 40752694  T
Q  182 tgttctttgg 191  Q
    ||||||||||    
T  40752693 tgttctttgg 40752684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 41471573 - 41471511
Alignment:
Q  82 ttctcattcacttcatcagaaaactttctcttagctgcttcctcaaatggcttaatatcaagt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||    
T  41471573 ttctcattcacttcatcagaaaactttctcttagctgcttccaaaaatggcttaatctcaagt 41471511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 41478461 - 41478399
Alignment:
Q  82 ttctcattcacttcatcagaaaactttctcttagctgcttcctcaaatggcttaatatcaagt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||    
T  41478461 ttctcattcacttcatcagaaaactttctcttagctgcttccaaaaatggcttaatctcaagt 41478399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 41485669 - 41485577
Alignment:
Q  82 ttctcattcacttcatcagaaaactttctcttagctgcttcctcaaatggcttaatatcaagtctaaccatcattttcccagcaattatgact 174  Q
    |||||||||| |||||||||||  ||||||||||||||||||| |||||||||||||||||||    ||||| ||||| ||| ||||||||||    
T  41485669 ttctcattcatttcatcagaaatttttctcttagctgcttcctgaaatggcttaatatcaagttcgcccatccttttcacagaaattatgact 41485577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 279 - 710
Target Start/End: Original strand, 16408003 - 16408434
Alignment:
Q  279 tgagaaagatacatacacttattaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttgaagatcttccac 378  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16408003 tgagataggtacatacacttattaattttttgcgagcatcttgcaactcgtcattagttttgcgctcttgaacaacaagtgtttgttgaagatcttccac 16408102  T
Q  379 gccctccaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttatcatctagatcagtctctccaatgtgactcattacctgg 478  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||    
T  16408103 accctccaattcctcttccttttcctgcagctccattctgattgcttccaattttttcttatcatttcgatcagtctctccaatgtgattcattacctgg 16408202  T
Q  479 agagctcctttcagctgttcaatttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctt 578  Q
    | ||||||| | ||| |||||| |||||| ||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16408203 aaagctcctcttagccgttcaacttccaactccaatgcttgttttgcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctctttttctt 16408302  T
Q  579 tctgcatcatccaaccaaaagagttctcaaaacttaagtttgataca-gtaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatg 677  Q
    |||||| ||| ||||||||| ||| |||||||||| || | || ||| ||||||||| |||| |||  ||||||||| |||| ||||| |||||||||||    
T  16408303 tctgcaacatacaaccaaaatagtcctcaaaacttgag-tggacacatgtaactgaattaaaaactcgagataaaagaaaaatgaaatctgtgccttatg 16408401  T
Q  678 ctcttcggccaaatacatcattttttcatcggc 710  Q
     ||||| || |||  ||||||||||||||||||    
T  16408402 gtcttcagctaaacgcatcattttttcatcggc 16408434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 16407739 - 16407951
Alignment:
Q  17 cactttgagcaccactcgattgctttcgatttcactttattggaaagnnnnnnnn-agtcattgccttctcattcacttcatcagaaaactttctcttag 115  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||| || |||||||||||||    
T  16407739 cactttgagcaccactcatttgctttcgatttcactttattggaaagtttttttttagtcattgccttctcattcacttcatccgagaactttctcttag 16407838  T
Q  116 ctgcttcctcaaatggcttaatatcaagtctaaccatcattttcccagcaattatgacttgattggtgttctttggacaac-aaaccactgaacaaggga 214  Q
    ||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  16407839 ctgcttcctcaaatggcttaatatcaagtttacccatcattttcccggcaattatgacttgattagtgttctttggacaacgaaaccactgaacaaggga 16407938  T
Q  215 tgagaattacttg 227  Q
     || |||||||||    
T  16407939 agataattacttg 16407951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 471 - 602
Target Start/End: Complemental strand, 52481190 - 52481059
Alignment:
Q  471 ttacctggagagctcctttcagctgttcaatttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctc 570  Q
    |||||| || |||| || ||| ||||||||||||||||||||||| |||||||||| ||||||||||||  |||||||| ||||||||||||||||||||    
T  52481190 ttacctcgaaagcttctctcaactgttcaatttccaattccaatgcttgttttgcatcaagacctctctgtaggtcatggattttcttgtgaagtttctc 52481091  T
Q  571 tttttctttctgcatcatccaaccaaaagagt 602  Q
     ||||||||||||| |||||||||||||||||    
T  52481090 cttttctttctgcaacatccaaccaaaagagt 52481059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 279 - 438
Target Start/End: Complemental strand, 52481349 - 52481190
Alignment:
Q  279 tgagaaagatacatacacttattaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttgaagatcttccac 378  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||| ||||     
T  52481349 tgagaaaaatacatacacttattaacttttttcgggcatcttgcaactcgtcattagttttgcgctcctggacaacaagtgttcgttgaagatcatccat 52481250  T
Q  379 gccctccaattcctcttccttttcctgcagctccattctgattgcttccaattttttctt 438  Q
    | | |  |   ||||||| ||||||||||||||||||  |||||| |||| |||||||||    
T  52481249 gtcttgaaggccctcttctttttcctgcagctccatttcgattgcctccagttttttctt 52481190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 626 - 710
Target Start/End: Complemental strand, 52472391 - 52472307
Alignment:
Q  626 gtaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatgctcttcggccaaatacatcattttttcatcggc 710  Q
    ||||||||| |||||| |||| || |||||||||  ||||| |||||||||| ||||| ||||||| ||||||||||||||||||    
T  52472391 gtaactgaattaaatattgtacatgaaaggaaaatcaaatgcgtgccttatgttcttcagccaaatgcatcattttttcatcggc 52472307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 52481682 - 52481588
Alignment:
Q  77 ttgccttctcattcacttcatcagaaaactttctcttagctgcttcctcaaatggcttaatatcaagtctaaccatcattttcccagcaattatg 171  Q
    |||| ||| ||||||| |||||||||||||| |||||||||||||||  |||||||| | |||||||  || ||||| ||||| ||| |||||||    
T  52481682 ttgctttcccattcacctcatcagaaaacttcctcttagctgcttccaaaaatggctcagtatcaaggttacccatccttttcacagaaattatg 52481588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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