View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_10 (Length: 482)
Name: NF20316_low_10
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 42447583 - 42447141
Alignment:
| Q |
18 |
gtatgggcatctaattcttgtggaacttctggtgttttgatgatttacatgttatatttcttccgatatgttttgtcattatttttagtttgttccaagt |
117 |
Q |
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| T |
42447583 |
gtatgggcatctaattcttgtggaacttctggtgttttgatgatttacatgttatatttcttccgaaatgttttgtcattatttttagtttgttccaagt |
42447484 |
T |
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| Q |
118 |
ttgtattccatgtgttttccgaaatgtttgtaagtcactttatcaataccatataaagtaaggggttttcgtaacagttacctgcaatttttggtagtaa |
217 |
Q |
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| T |
42447483 |
ttgtattccatgtgttttccgaaatgtttgtaagtcactttatcaataccatataaagtaaggggttttcgtaacagttacctgcaatttttggtagtaa |
42447384 |
T |
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| Q |
218 |
caaatcccacttttcttgaaatgcatgctttgttttcataataacttccgctaaaatcctgaattctttacttattcaccgtgtaaattacttgacgnnn |
317 |
Q |
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| T |
42447383 |
caaatcccacttttcttgaaatgcatgctttgtgttcataataacttccgctaaaatcctgaattctttacttattcaccgtgtaaattacttgacgaaa |
42447284 |
T |
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| Q |
318 |
nnnntaaacaggttaagttacactagtgtttcggtatttgttgaagttctaagatatggaaatgacacgttctttgagtaaattctgattctgttccccg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42447283 |
aaaataaacaggttaagttacactagtgtttcggtatttgttgaagttctaagatatggaaatgacatgttctttgagtaaattctgattctgttccccg |
42447184 |
T |
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| Q |
418 |
attcacatgctcttctacttctagtgttggtgtactctaatca |
460 |
Q |
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| T |
42447183 |
attcacatgctcttctacttctagtgttggtgtactctaatca |
42447141 |
T |
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