View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_11 (Length: 465)
Name: NF20316_low_11
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 126 - 324
Target Start/End: Original strand, 8856952 - 8857150
Alignment:
| Q |
126 |
ttgcatcttataaaaggctaaacaaagccaaaaaagatgttttaacctttactgcagttttgatctcacaactttaccatgttgtgaaattggtaactct |
225 |
Q |
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| T |
8856952 |
ttgcatcttataaaaggctaaacaaagccaaaaaggatgttttaacctttactgcagttttgatctcacaactttaccatgttgtgaaattggtaactct |
8857051 |
T |
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| Q |
226 |
gtttgagtaaggtggaaatagtgattgatatatatttatgattgggcaataactaaaacgttttaaagggaaaaccatattgtcatttttgggtatgtt |
324 |
Q |
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| T |
8857052 |
gtttgagtgaggtggaaatagtgattgatatatatttatgattgggcaataactaaaacgttttaaagggaaaaccatattgtcatttttgggtatgtt |
8857150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 126 - 324
Target Start/End: Original strand, 8858425 - 8858623
Alignment:
| Q |
126 |
ttgcatcttataaaaggctaaacaaagccaaaaaagatgttttaacctttactgcagttttgatctcacaactttaccatgttgtgaaattggtaactct |
225 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8858425 |
ttgcatcttataaaaggctaaacaaagccaaaaaggatgttttaacctttactgcagttttgatctcacaactttaccatgttgtgaaattggtaactct |
8858524 |
T |
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| Q |
226 |
gtttgagtaaggtggaaatagtgattgatatatatttatgattgggcaataactaaaacgttttaaagggaaaaccatattgtcatttttgggtatgtt |
324 |
Q |
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| T |
8858525 |
gtttgagtgaggtggaaatagtgattgatatatatttatgattgggcaataactaaaacgttttaaagggaaaaccatattgtcatttttgggtatgtt |
8858623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 367 - 433
Target Start/End: Original strand, 8858656 - 8858722
Alignment:
| Q |
367 |
acttctccctactattttttggctatatccccactaagctttcatgagtcccattgtacaaatatgt |
433 |
Q |
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| T |
8858656 |
acttctccctactatgttttggccatatccccactaagctttcatgagttccattgtacaaatatgt |
8858722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 8858722 - 8858771
Alignment:
| Q |
408 |
tcatgagtcccattgtacaaatatgtttttatcttctctctgttcatctc |
457 |
Q |
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| T |
8858722 |
tcatgagttccattgtacaaatatgtttttatcttctctctgtttatctc |
8858771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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