View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_12 (Length: 464)
Name: NF20316_low_12
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 119 - 364
Target Start/End: Original strand, 41258090 - 41258349
Alignment:
| Q |
119 |
gtgtttgtagcaatgcattttggatctcagtgtgtttctgatgtagtaggagtctgattcatgaatgaaaacatcttgtttttactca-tttttgttgct |
217 |
Q |
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| T |
41258090 |
gtgtttgtagcaatgcattttggatctcagtgtgtttctgatgtagtaggagtctgattcatgaatgaaaacatcttgtttttactcattttttgttgct |
41258189 |
T |
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| Q |
218 |
taaacaattcatcttatttaatgctactatgattctatgccctcattaattattg-------------ttcgcaattactactggtatacatttcacatt |
304 |
Q |
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| T |
41258190 |
taaacaattcatcttatttaatgctactatcattctatgccctcattaattattgttatgacctttatttcgcaattactactagtatacatttcacatt |
41258289 |
T |
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| Q |
305 |
gattttgattctccaagcaaataatgagaaattgcggttcaattaattcaatttatgcca |
364 |
Q |
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| T |
41258290 |
gattttcattctccaagcgaataatgagaaattgcggttcaattaattcaatttatgcca |
41258349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 41257932 - 41258055
Alignment:
| Q |
1 |
ccaaacatcaacccaatccttttgcctaagaagaacgagaaggctgcaactactaccaaatctccatccaaggctaccaaatctccaaagaaagcttaga |
100 |
Q |
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| T |
41257932 |
ccaaacatcaacccaatccttttgcctaagaagaacgagaaggctgcaactactaccaaatctccatccaaggctaccaaatctccaaagaaagcttaga |
41258031 |
T |
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| Q |
101 |
tttagtttctagggtttggtgttt |
124 |
Q |
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| T |
41258032 |
tttagtttctagggtttggtgttt |
41258055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 23447953 - 23447923
Alignment:
| Q |
4 |
aacatcaacccaatccttttgcctaagaaga |
34 |
Q |
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| T |
23447953 |
aacatcaacccaatccttttgcctaagaaga |
23447923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 24298288 - 24298322
Alignment:
| Q |
1 |
ccaaacatcaacccaatccttttgcctaagaagaa |
35 |
Q |
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| T |
24298288 |
ccaaacattaacccaatccttttgcctaagaagaa |
24298322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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