View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_14 (Length: 452)
Name: NF20316_low_14
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Complemental strand, 41867123 - 41866703
Alignment:
| Q |
13 |
attattctcgagaaaatttggaaaaagtgtttgttgatgaattaaatttgctaatttttctaaataattattgaccattgtannnnnnnn-ctgaataaa |
111 |
Q |
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| T |
41867123 |
attattctcgagaaagtttggaaaaagtgtttgatgatgaattaaatttgctaatttttctaaataattattggccattgtatttttttttctgaataaa |
41867024 |
T |
|
| Q |
112 |
ttattggtcattgcaagacaatataaacaaactaatgtgtttggtaattttagtttctcatacatcattttatctatgtctacttttttattaaagcgat |
211 |
Q |
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| T |
41867023 |
ttattggtcattgcaagacaatataaacaaactaatgtgtttggcaattttagtttatcatacatcattttatctatgtctacttttttattaaagcgat |
41866924 |
T |
|
| Q |
212 |
caaaatatcataagttttattgttctaataccattagtcnnnnnnnaagaaatactttgattcataaataaataactacactatctatcaacgtttgatc |
311 |
Q |
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| T |
41866923 |
caaaatatcataagttttattgttctaataccattagtctttttttaagaaatactttgattcataaataaataactacactatctatcaacgtttgatc |
41866824 |
T |
|
| Q |
312 |
agcaaaatcatgtaataaaaattgcttaagcttataaaacaagagtttttaattgcagaaataaaaacacatggtgcttatggatatgctttgtggttat |
411 |
Q |
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| T |
41866823 |
aacaaaatcatgtaataaaaattgcttaagcttataaaacaagagtttttaattgcagaaataaaaacacatggtgcttatggatatgctttgtggttat |
41866724 |
T |
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| Q |
412 |
ttaagggtaaaaatgaacttt |
432 |
Q |
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| T |
41866723 |
ttaagggtaaaaatgaacttt |
41866703 |
T |
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