View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20316_low_15 (Length: 449)

Name: NF20316_low_15
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20316_low_15
NF20316_low_15
[»] chr5 (9 HSPs)
chr5 (19-197)||(2067930-2068108)
chr5 (279-320)||(33574028-33574069)
chr5 (206-248)||(33574028-33574070)
chr5 (280-317)||(35424274-35424311)
chr5 (287-320)||(42655798-42655831)
chr5 (276-312)||(14098509-14098545)
chr5 (289-317)||(18861899-18861927)
chr5 (276-319)||(33574133-33574177)
chr5 (276-320)||(42654134-42654178)
[»] chr1 (9 HSPs)
chr1 (324-437)||(50545950-50546063)
chr1 (276-320)||(2071471-2071515)
chr1 (206-252)||(2071470-2071516)
chr1 (206-252)||(50546056-50546102)
chr1 (276-320)||(50546057-50546101)
chr1 (285-320)||(2070792-2070827)
chr1 (285-320)||(19790845-19790880)
chr1 (224-252)||(12644875-12644903)
chr1 (206-246)||(19790844-19790884)
[»] chr3 (7 HSPs)
chr3 (324-440)||(48058318-48058434)
chr3 (198-252)||(48058957-48059011)
chr3 (276-320)||(48058280-48058324)
chr3 (206-252)||(48058279-48058325)
chr3 (276-320)||(48058958-48059002)
chr3 (275-320)||(31595140-31595185)
chr3 (275-320)||(31595858-31595903)
[»] scaffold0006 (4 HSPs)
scaffold0006 (324-440)||(223850-223966)
scaffold0006 (344-440)||(224393-224489)
scaffold0006 (206-252)||(223811-223857)
scaffold0006 (276-320)||(223812-223856)
[»] chr4 (1 HSPs)
chr4 (327-362)||(22406422-22406457)
[»] chr7 (1 HSPs)
chr7 (58-96)||(1079041-1079079)
[»] chr8 (1 HSPs)
chr8 (280-317)||(16723691-16723728)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 5e-94; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 2067930 - 2068108
Alignment:
Q  19 gaacggactcgaaggaggaatatcacgggtagccaacacaggatttctggaatgaggtcgaatggaagggtgggcagaagctgtacgttcagtgaaggtg 118  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2067930 gaacggaatcgaaggaggaatatcacgggtagccaacacaggatttctggaatgaggtcgaatggaagggtgggcagaagctgtacgttcagtgaaggtg 2068029  T
Q  119 actgtgatgttagggttagggttttctccgttgttaccatctttgacgacgaaatcatcatcaatctggatatgagtac 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2068030 actgtgatgttagggttagggttttctccgttgttaccatctttgacgacgaaatcatcatcaatctggatatgagtac 2068108  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 33574028 - 33574069
Alignment:
Q  279 atcctttcaccctctcattttaaaagtcctctcacttgatat 320  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  33574028 atcctctcaccctctcattttaaaagtcctctcacttgatat 33574069  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 33574070 - 33574028
Alignment:
Q  206 catatcaagtaagatgaattttaaaatgagagggtgagaggat 248  Q
    |||||||||| ||| || |||||||||||||||||||||||||    
T  33574070 catatcaagtgagaggacttttaaaatgagagggtgagaggat 33574028  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 35424311 - 35424274
Alignment:
Q  280 tcctttcaccctctcattttaaaagtcctctcacttga 317  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  35424311 tcctctcaccctctcattttaaaagtcctctcatttga 35424274  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 320
Target Start/End: Original strand, 42655798 - 42655831
Alignment:
Q  287 accctctcattttaaaagtcctctcacttgatat 320  Q
    |||||||||||||| |||||||||||||||||||    
T  42655798 accctctcattttataagtcctctcacttgatat 42655831  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 14098545 - 14098509
Alignment:
Q  276 ttaatcctttcaccctctcattttaaaagtcctctca 312  Q
    |||||||| |||||||||||||| |||||||||||||    
T  14098545 ttaatcctctcaccctctcatttaaaaagtcctctca 14098509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 18861927 - 18861899
Alignment:
Q  289 cctctcattttaaaagtcctctcacttga 317  Q
    |||||||||||||||||||||||||||||    
T  18861927 cctctcattttaaaagtcctctcacttga 18861899  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 319
Target Start/End: Complemental strand, 33574177 - 33574133
Alignment:
Q  276 ttaatcctttcaccctctcattttaaaa-gtcctctcacttgata 319  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||    
T  33574177 ttaatcctctcaccctctcattctaaaatgtcctctcacttgata 33574133  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 42654178 - 42654134
Alignment:
Q  276 ttaatcctttcaccctctcattttaaaagtcctctcacttgatat 320  Q
    |||||||||||| ||||| ||||||||||||||||| ||| ||||    
T  42654178 ttaatcctttcatcctcttattttaaaagtcctctcccttaatat 42654134  T

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Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 324 - 437
Target Start/End: Complemental strand, 50546063 - 50545950
Alignment:
Q  324 ggattaaatcttgtccattagattaatatcaaccgtcaggattaaagtagtcataaatattgcaagtgcacgagattacttatgtccaactatcttcttc 423  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  50546063 ggattaaatcttgtccattagattaacatcaacggtcaggattaaagtagtcataaatattgcaagtgcacgagatcacttatgtccaactatcttcttc 50545964  T
Q  424 cctctcctattctc 437  Q
    ||||||||||||||    
T  50545963 cctctcctattctc 50545950  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 2071471 - 2071515
Alignment:
Q  276 ttaatcctttcaccctctcattttaaaagtcctctcacttgatat 320  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  2071471 ttaatcctctcaccctctcattttaaaagtcctctcacttgatat 2071515  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 2071516 - 2071470
Alignment:
Q  206 catatcaagtaagatgaattttaaaatgagagggtgagaggattaaa 252  Q
    |||||||||| ||| || |||||||||||||||||||||||||||||    
T  2071516 catatcaagtgagaggacttttaaaatgagagggtgagaggattaaa 2071470  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 50546102 - 50546056
Alignment:
Q  206 catatcaagtaagatgaattttaaaatgagagggtgagaggattaaa 252  Q
    |||||||||||||| || ||||||||||||||||| |||||||||||    
T  50546102 catatcaagtaagaggacttttaaaatgagagggtaagaggattaaa 50546056  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 50546057 - 50546101
Alignment:
Q  276 ttaatcctttcaccctctcattttaaaagtcctctcacttgatat 320  Q
    |||||||| | |||||||||||||||||||||||| |||||||||    
T  50546057 ttaatcctcttaccctctcattttaaaagtcctcttacttgatat 50546101  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 320
Target Start/End: Complemental strand, 2070827 - 2070792
Alignment:
Q  285 tcaccctctcattttaaaagtcctctcacttgatat 320  Q
    |||||||||||||||||||||| |||||||||||||    
T  2070827 tcaccctctcattttaaaagtcttctcacttgatat 2070792  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 320
Target Start/End: Complemental strand, 19790880 - 19790845
Alignment:
Q  285 tcaccctctcattttaaaagtcctctcacttgatat 320  Q
    ||||||||||||||||||| ||||||||||||||||    
T  19790880 tcaccctctcattttaaaactcctctcacttgatat 19790845  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 252
Target Start/End: Complemental strand, 12644903 - 12644875
Alignment:
Q  224 ttttaaaatgagagggtgagaggattaaa 252  Q
    |||||||||||||||||||||||||||||    
T  12644903 ttttaaaatgagagggtgagaggattaaa 12644875  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 19790844 - 19790884
Alignment:
Q  206 catatcaagtaagatgaattttaaaatgagagggtgagagg 246  Q
    |||||||||| ||| || |||||||||||||||||||||||    
T  19790844 catatcaagtgagaggagttttaaaatgagagggtgagagg 19790884  T

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Target: chr3 (Bit Score: 101; Significance: 7e-50; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 324 - 440
Target Start/End: Original strand, 48058318 - 48058434
Alignment:
Q  324 ggattaaatcttgtccattagattaatatcaaccgtcaggattaaagtagtcataaatattgcaagtgcacgagattacttatgtccaactatcttcttc 423  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||    
T  48058318 ggattaaatcttgtccattagattaatatcaactgtcaggattaaagtagtcataaatattgcaagtgcacgagatcacttaaatccaactatcttcttc 48058417  T
Q  424 cctctcctattctctgc 440  Q
    |||||||||||||||||    
T  48058418 cctctcctattctctgc 48058434  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 48059011 - 48058957
Alignment:
Q  198 atatgggacatatcaagtaagatgaattttaaaatgagagggtgagaggattaaa 252  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48059011 atataggacatatcaagtaagaggaattttaaaatgagagggtgagaggattaaa 48058957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 48058324 - 48058280
Alignment:
Q  276 ttaatcctttcaccctctcattttaaaagtcctctcacttgatat 320  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  48058324 ttaatcctctcaccctctcattttaaaagtcctctcacttgatat 48058280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 48058279 - 48058325
Alignment:
Q  206 catatcaagtaagatgaattttaaaatgagagggtgagaggattaaa 252  Q
    |||||||||| ||| || |||||||||||||||||||||||||||||    
T  48058279 catatcaagtgagaggacttttaaaatgagagggtgagaggattaaa 48058325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 48058958 - 48059002
Alignment:
Q  276 ttaatcctttcaccctctcattttaaaagtcctctcacttgatat 320  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||    
T  48058958 ttaatcctctcaccctctcattttaaaattcctcttacttgatat 48059002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 31595185 - 31595140
Alignment:
Q  275 attaatcctttcaccctctcattttaaaagtcctctcacttgatat 320  Q
    |||| |||| |||||||||||||| |||| ||||||||||||||||    
T  31595185 attactcctctcaccctctcatttaaaaactcctctcacttgatat 31595140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 320
Target Start/End: Original strand, 31595858 - 31595903
Alignment:
Q  275 attaatcctttcaccctctcattttaaaagtcctctcacttgatat 320  Q
    |||| |||| |||||||||||||| |||| ||||||||||||||||    
T  31595858 attactcctctcaccctctcatttaaaaactcctctcacttgatat 31595903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 324 - 440
Target Start/End: Original strand, 223850 - 223966
Alignment:
Q  324 ggattaaatcttgtccattagattaatatcaaccgtcaggattaaagtagtcataaatattgcaagtgcacgagattacttatgtccaactatcttcttc 423  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  223850 ggattaaatcttgtccattagattaatatcaacggtcaggattaaaggagtcataaatattgcaagtgcgtgagatcacttatgtccaactatcttcttc 223949  T
Q  424 cctctcctattctctgc 440  Q
    |||||||||||||||||    
T  223950 cctctcctattctctgc 223966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 344 - 440
Target Start/End: Complemental strand, 224489 - 224393
Alignment:
Q  344 gattaatatcaaccgtcaggattaaagtagtcataaatattgcaagtgcacgagattacttatgtccaactatcttcttccctctcctattctctgc 440  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  224489 gattaatatcaacggtcaggattaaagtagtcataaatattgcaagtgcacgagatcacttatgtccaactatcttcttccctctcctattctctgc 224393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 223811 - 223857
Alignment:
Q  206 catatcaagtaagatgaattttaaaatgagagggtgagaggattaaa 252  Q
    |||||||||||||| || |||||||||||||||||| ||||||||||    
T  223811 catatcaagtaagaggacttttaaaatgagagggtgggaggattaaa 223857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 223856 - 223812
Alignment:
Q  276 ttaatcctttcaccctctcattttaaaagtcctctcacttgatat 320  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||    
T  223856 ttaatcctcccaccctctcattttaaaagtcctcttacttgatat 223812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 362
Target Start/End: Complemental strand, 22406457 - 22406422
Alignment:
Q  327 ttaaatcttgtccattagattaatatcaaccgtcag 362  Q
    |||||||||||||||||||||||||||||| |||||    
T  22406457 ttaaatcttgtccattagattaatatcaacggtcag 22406422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 1079041 - 1079079
Alignment:
Q  58 aggatttctggaatgaggtcgaatggaagggtgggcaga 96  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  1079041 aggatttctggaatgacgtcaaatggaagggtgggcaga 1079079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 16723728 - 16723691
Alignment:
Q  280 tcctttcaccctctcattttaaaagtcctctcacttga 317  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  16723728 tcctctcaccctctcattttaaaagtcctctcatttga 16723691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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