View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20316_low_18 (Length: 420)
Name: NF20316_low_18
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 186 - 411
Target Start/End: Original strand, 31021293 - 31021521
Alignment:
| Q |
186 |
tggtagtaggaatttaggattcataacaataagataagacaagtggtaagtgaaccaaatatcatgataatgaaaatacctgtccaatttcaaacaaaag |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31021293 |
tggtagtaggaatttaggattcataacaataagataagacaagtggtaagtgaaccaaatatcatgataatgaaaatacctgtccaatttcaaacaaaag |
31021392 |
T |
|
| Q |
286 |
aagaagacaatgaaaatgtataggaaattgtatttattattattaatagcaaaagcaataatagccattatcaatcatagtataatagcaaaagc---ac |
382 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || |
|
|
| T |
31021393 |
aagaagacaatgaaaatgtgtaggaaattgtatttattattattaatagcaaaagcaataatggccattataaatcatagtataatagcaaaagcagtac |
31021492 |
T |
|
| Q |
383 |
tgacaaggatcgtattaagatagtataat |
411 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
31021493 |
tgacaaggatcatattaagatagtataat |
31021521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 31020992 - 31021174
Alignment:
| Q |
1 |
aatttcataattcgatcctcaaagtatataccccactcattttacaaagcaaaatatattgtagaaaaagagataaatctttcaccttttcgactttttg |
100 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31020992 |
aatttcattattcgatccgcaaagtatataccccactcattttacaaagcaaaatatattgtagaaaaagagataaatctttctccttttcgactttttg |
31021091 |
T |
|
| Q |
101 |
aaaaatagaatgaataatttctaatgttaaatttctatttttgatacactaacttgcgtccatggaatttaccttaaaagaca |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31021092 |
aaaaatagaatgaataatttctaatgttaaatttctatttttgatacactaacttgcgtccatggaatttaccttaaaagaca |
31021174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 31030837 - 31030994
Alignment:
| Q |
27 |
tataccccactcattttacaaagcaaaatatattgtagaaaaagagataaa-tctttcaccttttcgactttttgaaaaatagaatgaataatttctaat |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | ||||||||||||| |||||| |||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
31030837 |
tataccccactcattttacaaagcaaaataaattggacaaaaagagataaaatctttctccttttttactttttgaaaaatagaatgcataatttctaat |
31030936 |
T |
|
| Q |
126 |
gttaaatttctatttttgatacactaacttgcgtccatggaatttaccttaaaagaca |
183 |
Q |
| |
|
| | ||| ||||||||||| ||||||||| || | ||| |||||||| |||||||| |
|
|
| T |
31030937 |
ataatttttttatttttgatatactaacttgtgttcttggcatttacctaaaaagaca |
31030994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 249 - 372
Target Start/End: Original strand, 31014427 - 31014553
Alignment:
| Q |
249 |
atgataatgaaaatacctgtccaatttcaaacaaaagaagaagacaatgaaaatgtataggaaattgtatt----tattattattaatagcaaaagcaat |
344 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| | |||| | | ||||||||||||||||||||| |
|
|
| T |
31014427 |
atgataatgaaaatacctgtccaacttcaaacaaaagaagaagacacagaaaatgtatatgaaa-tatatttgggtttgattattaatagcaaaagcaat |
31014525 |
T |
|
| Q |
345 |
aatagccattatcaatcatagtataata |
372 |
Q |
| |
|
||| |||||||||| ||||||||||| |
|
|
| T |
31014526 |
aatgcccattatcaacgatagtataata |
31014553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University