View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20316_low_19 (Length: 415)

Name: NF20316_low_19
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20316_low_19
NF20316_low_19
[»] chr4 (4 HSPs)
chr4 (19-362)||(8533281-8533643)
chr4 (228-335)||(7430010-7430117)
chr4 (218-335)||(7555804-7555921)
chr4 (359-404)||(8533691-8533737)
[»] chr2 (2 HSPs)
chr2 (204-335)||(7817950-7818081)
chr2 (204-335)||(1485294-1485425)
[»] chr7 (2 HSPs)
chr7 (204-335)||(23906536-23906667)
chr7 (218-335)||(9003455-9003572)
[»] chr1 (1 HSPs)
chr1 (204-335)||(24601497-24601628)
[»] chr3 (1 HSPs)
chr3 (204-335)||(44448659-44448790)
[»] chr5 (1 HSPs)
chr5 (215-340)||(19860018-19860143)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 362
Target Start/End: Original strand, 8533281 - 8533643
Alignment:
Q  19 ggaaccccagtccgaaactacttacgaaactttgttactggcttctcgggtttcataaacagaccgaatgacattctgtttgtagagctgacatcactgt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8533281 ggaaccccagtccgaaactacttacgaaactttgttactggcttctcgggtttcataaacagaccgaatgacattctgtttgcagagctgacatcactgt 8533380  T
Q  119 ttgagggtcttaaaattgcggtatcgttgaatatagaggagatggtttgttattctgattcgcttctggcagttaatctcac------------------ 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||                      
T  8533381 ttgagggtcttaaaattgcggtatcgttgaatatagaggagatggtttgttattctgattcgcttctagcagttaatctcaccaatggtgacgcaccccg 8533480  T
Q  201 -taccatgtctatgccgtgctcatccagaatattaaggacatgttggaatcaagaaattactcgcttcatcactcgctcatagagggtaaccaatgtgcg 299  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8533481 gtaccatgtctatgctgtgctcatccagaatattaaggacatgttggaatcaagaaattactcgcttcatcactcgctcatagagggtaaccaatgtgcg 8533580  T
Q  300 gactttatggcgaaactaggagcttcaacagatgttcaattgacagtccatcccttgcctcct 362  Q
    ||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||    
T  8533581 gactttatggcgaaactagcagcttcaacatatgttgaattgacagtccatcccttgcctcct 8533643  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 228 - 335
Target Start/End: Complemental strand, 7430117 - 7430010
Alignment:
Q  228 aatattaaggacatgttggaatcaagaaattactcgcttcatcactcgctcatagagggtaaccaatgtgcggactttatggcgaaactaggagcttcaa 327  Q
    |||||||||||| || || | ||||||||||||||  ||||||||||||||||||||||||| || |||||||||||||||||||| |||||| || |||    
T  7430117 aatattaaggacctgctgaattcaagaaattactctattcatcactcgctcatagagggtaatcattgtgcggactttatggcgaagctaggatctacaa 7430018  T
Q  328 cagatgtt 335  Q
    ||||||||    
T  7430017 cagatgtt 7430010  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 218 - 335
Target Start/End: Original strand, 7555804 - 7555921
Alignment:
Q  218 gctcatccagaatattaaggacatgttggaatcaagaaattactcgcttcatcactcgctcatagagggtaaccaatgtgcggactttatggcgaaacta 317  Q
    |||||| || |||||||||||| || || | |||||||||||||   ||||||||||||||| || |||||| || ||||| |||||||||||||| |||    
T  7555804 gctcattcaaaatattaaggacctgctgaattcaagaaattactttattcatcactcgctcagagtgggtaatcattgtgcagactttatggcgaagcta 7555903  T
Q  318 ggagcttcaacagatgtt 335  Q
    |||||| ||| |||||||    
T  7555904 ggagctacaaaagatgtt 7555921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 8533691 - 8533737
Alignment:
Q  359 tccttggtaactagttgtt-cctttttgttcatgttcttttcccttt 404  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||    
T  8533691 tccttagtaactagttgtttcctttttgttcatgttcttttcccttt 8533737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 204 - 335
Target Start/End: Original strand, 7817950 - 7818081
Alignment:
Q  204 catgtctatgccgtgctcatccagaatattaaggacatgttggaatcaagaaattactcgcttcatcactcgctcatagagggtaaccaatgtgcggact 303  Q
    ||||||||||| |||||||| || |||||||||||| || || | ||||||||||||||  ||||||||||||||| ||||||||| || ||||||||||    
T  7817950 catgtctatgctgtgctcattcaaaatattaaggacttgctgaattcaagaaattactctattcatcactcgctcagagagggtaatcattgtgcggact 7818049  T
Q  304 ttatggcgaaactaggagcttcaacagatgtt 335  Q
    |||||||||| ||||||||| |||||||||||    
T  7818050 ttatggcgaagctaggagctacaacagatgtt 7818081  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 204 - 335
Target Start/End: Complemental strand, 1485425 - 1485294
Alignment:
Q  204 catgtctatgccgtgctcatccagaatattaaggacatgttggaatcaagaaattactcgcttcatcactcgctcatagagggtaaccaatgtgcggact 303  Q
    ||||||||||  ||| |||| || |||||||||||| || || | |||||||||||||   ||||||||||| ||| | ||||||| || |||| |||||    
T  1485425 catgtctatgttgtgttcattcaaaatattaaggacctgctgaattcaagaaattactttattcatcactcgttcagatagggtaatcattgtgtggact 1485326  T
Q  304 ttatggcgaaactaggagcttcaacagatgtt 335  Q
    || ||||||| ||||||||| |||||||||||    
T  1485325 ttgtggcgaagctaggagctacaacagatgtt 1485294  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 335
Target Start/End: Complemental strand, 23906667 - 23906536
Alignment:
Q  204 catgtctatgccgtgctcatccagaatattaaggacatgttggaatcaagaaattactcgcttcatcactcgctcatagagggtaaccaatgtgcggact 303  Q
    ||||| ||||| |||||||| || |||||||||||| || || | ||||||||||||||  ||||||||||||||| ||||||||| || ||||||||||    
T  23906667 catgtttatgcggtgctcattcaaaatattaaggacctgctgaattcaagaaattactctattcatcactcgctcagagagggtaatcattgtgcggact 23906568  T
Q  304 ttatggcgaaactaggagcttcaacagatgtt 335  Q
    |||||||||| ||||||||| |||||||||||    
T  23906567 ttatggcgaagctaggagctacaacagatgtt 23906536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 218 - 335
Target Start/End: Complemental strand, 9003572 - 9003455
Alignment:
Q  218 gctcatccagaatattaaggacatgttggaatcaagaaattactcgcttcatcactcgctcatagagggtaaccaatgtgcggactttatggcgaaacta 317  Q
    |||||| || |||||||||||| || || | ||||||||||||||  ||||||||||||||| ||||||||  || |||||||||||||||||||| |||    
T  9003572 gctcattcaaaatattaaggacctgctgaattcaagaaattactctattcatcactcgctcaaagagggtagtcattgtgcggactttatggcgaagcta 9003473  T
Q  318 ggagcttcaacagatgtt 335  Q
    |||||| |||||||||||    
T  9003472 ggagctacaacagatgtt 9003455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 335
Target Start/End: Original strand, 24601497 - 24601628
Alignment:
Q  204 catgtctatgccgtgctcatccagaatattaaggacatgttggaatcaagaaattactcgcttcatcactcgctcatagagggtaaccaatgtgcggact 303  Q
    ||||||||||| |||||||| || |||||||||||| || || | ||||||||||||||  ||||||||||||||| ||||||||| || |||| |||||    
T  24601497 catgtctatgctgtgctcattcaaaatattaaggacctgctgaattcaagaaattactctattcatcactcgctcagagagggtaatcattgtgtggact 24601596  T
Q  304 ttatggcgaaactaggagcttcaacagatgtt 335  Q
    |||||||||| ||||||||| |||||||||||    
T  24601597 ttatggcgaagctaggagctacaacagatgtt 24601628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 204 - 335
Target Start/End: Original strand, 44448659 - 44448790
Alignment:
Q  204 catgtctatgccgtgctcatccagaatattaaggacatgttggaatcaagaaattactcgcttcatcactcgctcatagagggtaaccaatgtgcggact 303  Q
    ||||| ||||| |||||||| || |||||||||||| || || | ||||||||||||||  ||||||||||||| | ||||||||| || ||||| ||||    
T  44448659 catgtttatgctgtgctcattcaaaatattaaggacctgctgaattcaagaaattactctattcatcactcgcttagagagggtaatcattgtgcagact 44448758  T
Q  304 ttatggcgaaactaggagcttcaacagatgtt 335  Q
    |||||||||| ||||||||| |||||||||||    
T  44448759 ttatggcgaagctaggagctacaacagatgtt 44448790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 215 - 340
Target Start/End: Original strand, 19860018 - 19860143
Alignment:
Q  215 cgtgctcatccagaatattaaggacatgttggaatcaagaaattactcgcttcatcactcgctcatagagggtaaccaatgtgcggactttatggcgaaa 314  Q
    ||||| ||||||  |||||||| || |||||| ||||||||||| |||||||||||||||||||| ||||||||| |||| |||||| ||||| | ||||    
T  19860018 cgtgcccatccaagatattaagaacctgttgggatcaagaaatttctcgcttcatcactcgctcagagagggtaagcaatatgcggattttattgtgaaa 19860117  T
Q  315 ctaggagcttcaacagatgttcaatt 340  Q
    |||||||| ||||||| |||| ||||    
T  19860118 ctaggagcctcaacaggtgttgaatt 19860143  T

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