View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_2 (Length: 652)
Name: NF20316_low_2
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Original strand, 46130261 - 46130673
Alignment:
| Q |
16 |
attgatgtgagtactcttggtttaatggtatttaaaaaatttactgggattttctgatggctatctcatcttaaaactgaggcactgtctttctttattt |
115 |
Q |
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| T |
46130261 |
attgatgtgagtactcttggtttaatggtatttaaaaaatttactgggattttctgatggctatctcatcttaaaactgaggcactgtctttctttattt |
46130360 |
T |
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| Q |
116 |
cttcatccagaccatcatagctgatatgcgcaaggttttggcaaaaaatcctctagtagaacnnnnnnnnttgcacagaagggttttcctggaggatgtc |
215 |
Q |
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| T |
46130361 |
cttcatgcagaccatcatagctgatatgcgcaaggttttggcaaaaaatcctctagtagaacaaaaaaaattgcacagaagggttttcctggaggatgtc |
46130460 |
T |
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| Q |
216 |
aatccagaaaatcaagctcttatggttgatacctttttctgttaattggtttatatacttttttatgaaattatgaattccagtatcatattttcttccc |
315 |
Q |
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| T |
46130461 |
aatccagaaaatcaagctcttatggttgatacctttttctgttaattggtttatatacttttttatgaaattatgaattccagtatcttattttcttccc |
46130560 |
T |
|
| Q |
316 |
tttatcttcagtcttggttttgaaaggaagttataaggctaaccttgagatcatctcatagcatagccagggcaaagtaccaattaggcttgtaggcctt |
415 |
Q |
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| T |
46130561 |
tttatcttcagtcttggttttgaaaggaagttataaggctaaccttgagatcatctcatagcatagccagggcaaagtaccaattaggcttgtaggcttt |
46130660 |
T |
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| Q |
416 |
agctatgaattta |
428 |
Q |
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| T |
46130661 |
agctatgaattta |
46130673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 448 - 636
Target Start/End: Original strand, 46130897 - 46131085
Alignment:
| Q |
448 |
catttatcatctgtttcattccaaagtggttgtcgaattataccatgataggtttcctgtgtcatttatgtattgcccagtaatttatcaatcattggaa |
547 |
Q |
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| T |
46130897 |
catttatcatctgtttcattccaaagtggttgtcgaattataccatgataggtttcctgtgtcatttatgtattgcccagtaatttatcaatcattggaa |
46130996 |
T |
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| Q |
548 |
tctgattggctatcttcacccatggcggcaatgaagcatttatttcactaacattttggaatatgtcaaatctgcttttagtccctatt |
636 |
Q |
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| T |
46130997 |
tctgattggctatcttcacccatggcggcaatgaagcatttatttcattaacattttggaatatgtcaaatctgcttttagtccctatt |
46131085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 46099182 - 46099217
Alignment:
| Q |
133 |
tagctgatatgcgcaaggttttggcaaaaaatcctc |
168 |
Q |
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| T |
46099182 |
tagctgatatgcgcaaggttttggctaaaaatcctc |
46099217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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