View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20316_low_21 (Length: 399)

Name: NF20316_low_21
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20316_low_21
NF20316_low_21
[»] chr7 (16 HSPs)
chr7 (191-399)||(21525140-21525348)
chr7 (7-157)||(21529891-21530041)
chr7 (215-331)||(21530207-21530323)
chr7 (194-338)||(21527550-21527695)
chr7 (7-157)||(48826226-48826374)
chr7 (213-342)||(21531661-21531790)
chr7 (191-342)||(21527335-21527487)
chr7 (70-157)||(19835383-19835468)
chr7 (54-157)||(24375577-24375677)
chr7 (7-127)||(37180288-37180409)
chr7 (40-153)||(24237083-24237194)
chr7 (83-157)||(19423923-19423994)
chr7 (193-328)||(21531452-21531588)
chr7 (11-157)||(13726429-13726570)
chr7 (69-107)||(2898542-2898580)
chr7 (340-381)||(21530272-21530313)
[»] chr4 (7 HSPs)
chr4 (7-157)||(12049870-12050018)
chr4 (7-157)||(54857071-54857219)
chr4 (7-153)||(49600380-49600523)
chr4 (12-157)||(51850380-51850515)
chr4 (40-107)||(8368087-8368154)
chr4 (79-157)||(3125229-3125305)
chr4 (54-107)||(52643510-52643563)
[»] chr1 (7 HSPs)
chr1 (7-107)||(50741457-50741557)
chr1 (7-156)||(31460933-31461080)
chr1 (7-157)||(32226045-32226184)
chr1 (40-106)||(36497133-36497199)
chr1 (67-115)||(36551436-36551484)
chr1 (70-156)||(19636104-19636188)
chr1 (70-116)||(25710793-25710839)
[»] chr5 (4 HSPs)
chr5 (7-153)||(1374736-1374880)
chr5 (7-107)||(32766406-32766506)
chr5 (54-107)||(8117485-8117538)
chr5 (70-156)||(30874594-30874679)
[»] chr2 (6 HSPs)
chr2 (11-155)||(29264414-29264556)
chr2 (40-157)||(7154664-7154779)
chr2 (7-127)||(17316233-17316354)
chr2 (54-153)||(45709759-45709856)
chr2 (69-127)||(35819382-35819441)
chr2 (54-107)||(12732748-12732801)
[»] chr8 (7 HSPs)
chr8 (7-152)||(22575953-22576096)
chr8 (54-157)||(25029647-25029748)
chr8 (7-107)||(14362266-14362366)
chr8 (73-157)||(13341638-13341721)
chr8 (54-149)||(27707899-27707993)
chr8 (57-152)||(28855447-28855541)
chr8 (191-338)||(29675532-29675680)
[»] scaffold0024 (1 HSPs)
scaffold0024 (12-93)||(101695-101776)
[»] chr3 (2 HSPs)
chr3 (7-144)||(41654225-41654360)
chr3 (69-107)||(30484837-30484875)
[»] scaffold0252 (1 HSPs)
scaffold0252 (54-128)||(16592-16667)
[»] scaffold0172 (1 HSPs)
scaffold0172 (40-107)||(30684-30751)
[»] chr6 (3 HSPs)
chr6 (7-122)||(2252018-2252126)
chr6 (54-157)||(31462413-31462512)
chr6 (70-107)||(8152512-8152549)
[»] scaffold0380 (1 HSPs)
scaffold0380 (54-157)||(10458-10559)
[»] scaffold0072 (1 HSPs)
scaffold0072 (55-153)||(6011-6107)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 191 - 399
Target Start/End: Complemental strand, 21525348 - 21525140
Alignment:
Q  191 aggtttatacatgtgcgagttagctgccatctcacaatttctatcaacatcacccccaaaattccggtatttaaagggaaatgtaatttcatacaagcta 290  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21525348 aggtttatacatgtgcgagtgtgctgccatctcacaatttctatcaacatcacccccaaaattccggtatttaaagggaaatgtaatttcatacgagcta 21525249  T
Q  291 ttcgaggaattggccaataaaaccagaagcttaaaacaacagatgtgtgcaatttctatcaacatcaccccgaaaattccggtatttaaaggaacttgaa 390  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21525248 ttcgaggaattggccaataaaatcagaagcttaaaacaacatgtgtgtgcaatttctatcaacatcacccccaaaattccggtatttaaaggaacttgaa 21525149  T
Q  391 ctctgtgct 399  Q
    || ||||||    
T  21525148 ctttgtgct 21525140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 7 - 157
Target Start/End: Complemental strand, 21530041 - 21529891
Alignment:
Q  7 aatctcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattatttt 106  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  21530041 aatctcggatagcggtgcgtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcgccgataattgattatttt 21529942  T
Q  107 tgcacaaattgcatgattaataagggtataaagtataaacaaacttatata 157  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  21529941 tgcacaaattgcattattaataagggcataaagtataaacaaacttatata 21529891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 331
Target Start/End: Complemental strand, 21530323 - 21530207
Alignment:
Q  215 tgccatctcacaatttctatcaacatcacccccaaaattccggtatttaaagggaaatgtaatttcatacaagctattcgaggaattggccaataaaacc 314  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||  |||||||| ||||||  |||||||||| |||||||||||||||| |    
T  21530323 tgccatctcacaatttctaccaacatcacccccgaaattccggtatttaaagaaaaatgtaaattcatatgagctattcgaagaattggccaataaaatc 21530224  T
Q  315 agaagcttaaaacaaca 331  Q
      |||||||||||||||    
T  21530223 gaaagcttaaaacaaca 21530207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 194 - 338
Target Start/End: Complemental strand, 21527695 - 21527550
Alignment:
Q  194 tttatacatgtgcgagtta-gctgccatctcacaatttctatcaacatcacccccaaaattccggtatttaaagggaaatgtaatttcatacaagctatt 292  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||||| |||||||||| | ||||||||||  |||  ||| ||||||  |||||||    
T  21527695 tttatacatgtgcgagtgatgctgccatctcacaatttctaccaacatcatccccaaaatttcagtatttaaagaaaaagttaagttcatatgagctatt 21527596  T
Q  293 cgaggaattggccaataaaaccagaagcttaaaacaacagatgtgt 338  Q
     || |||||||||||||||| | ||||||||||||||||| |||||    
T  21527595 tgaagaattggccaataaaatcggaagcttaaaacaacaggtgtgt 21527550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 157
Target Start/End: Complemental strand, 48826374 - 48826226
Alignment:
Q  7 aatctcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattat-tt 105  Q
    ||||||||||||| ||| |||| ||| ||||  ||||||||||||||||||||| |||||  |||||||||||||| ||||||||| |||||||||| ||    
T  48826374 aatctcggatagcagtgcgtagtggccgaccctaaaagtgggatagcgggatagagtatagcggtatgacaaatagtggtcaccgacatttgattatttt 48826275  T
Q  106 ttgcacaaattgcatgattaataagggtataaagtataaacaaacttatata 157  Q
    ||| ||||||| ||||   ||||| |||||||||||||||||||||| ||||    
T  48826274 ttgaacaaattacatg---aataatggtataaagtataaacaaacttgtata 48826226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 213 - 342
Target Start/End: Complemental strand, 21531790 - 21531661
Alignment:
Q  213 gctgccatctcacaatttctatcaacatcacccccaaaattccggtatttaaagggaaatgtaatttcatacaagctattcgaggaattggccaataaaa 312  Q
    |||||||||||| |||||||| |||||||||| ||||||||||||||||||| |  |||||||| | ||||  |||||||||| ||||||||||||||      
T  21531790 gctgccatctcataatttctaccaacatcacctccaaaattccggtatttaaggaaaaatgtaagtacatatgagctattcgaagaattggccaataatg 21531691  T
Q  313 ccagaagcttaaaacaacagatgtgtgcaa 342  Q
     | ||||||||||||||||| |||||||||    
T  21531690 tcggaagcttaaaacaacaggtgtgtgcaa 21531661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 191 - 342
Target Start/End: Original strand, 21527335 - 21527487
Alignment:
Q  191 aggtttatacatgtgcgagttag-ctgccatctcacaatttctatcaacatcacccccaaaattccggtatttaaagggaaatgtaatttcatacaagct 289  Q
    ||||||| |||||||||||| |  ||||||||||||||||| || |||||||| ||||||||||  ||||||  |||| |||||||| ||||||  ||||    
T  21527335 aggtttagacatgtgcgagtgatactgccatctcacaatttataccaacatcaaccccaaaattttggtattacaaggaaaatgtaagttcatatgagct 21527434  T
Q  290 attcgaggaattggccaataaaaccagaagcttaaaacaacagatgtgtgcaa 342  Q
    |||||| ||||| |||||||||    ||||| ||||||||||  |||||||||    
T  21527435 attcgaagaattagccaataaattttgaagcataaaacaacatgtgtgtgcaa 21527487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 19835468 - 19835383
Alignment:
Q  70 gtatgacaaatagcggtcaccgatatttgattat-ttttgcacaaattgcatgattaataagggtataaagtataaacaaacttatata 157  Q
    |||||||||||||||||||| ||||||||||||| ||||| | ||||| |||||||||||    |||||||||||||||||||||||||    
T  19835468 gtatgacaaatagcggtcactgatatttgattattttttggagaaattacatgattaata---ctataaagtataaacaaacttatata 19835383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 24375677 - 24375577
Alignment:
Q  54 gggatagtgtataagggtatgacaaatagcggtcaccgatatttgattatttttgcacaaattgcatgattaataagggtataaagtataaacaaactta 153  Q
    ||||||| |||||  ||||| |||||||||||||||||| ||||||||||||||  ||||||| ||||| |||||    |||||| ||||||||||||||    
T  24375677 gggatagcgtatagcggtataacaaatagcggtcaccgacatttgattattttttgacaaattacatgaataata---ctataaactataaacaaactta 24375581  T
Q  154 tata 157  Q
    ||||    
T  24375580 tata 24375577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 37180409 - 37180288
Alignment:
Q  7 aatctcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattat-tt 105  Q
    |||||| |||||||||| |||| |||  |||  |||||||||||| |||| ||| ||||   |||||||||||||| |||||||||||||||||||| ||    
T  37180409 aatctctgatagcggtgcgtagaggccaacctcaaaagtgggatatcgggttagcgtattgtggtatgacaaatagtggtcaccgatatttgattatttt 37180310  T
Q  106 ttgcacaaattgcatgattaat 127  Q
    ||| ||||||| ||||| ||||    
T  37180309 ttgaacaaattacatgaataat 37180288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 153
Target Start/End: Original strand, 24237083 - 24237194
Alignment:
Q  40 aaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgatta-tttttgcacaaattgcatgattaataagggtataaa 138  Q
    |||||||||||| |  | ||| |||||  |||||||||||||| ||||||||||||||||||| |||||| ||||||| ||||   ||||| | ||||||    
T  24237083 aaaagtgggatatcaagttagcgtatagtggtatgacaaatagtggtcaccgatatttgattattttttgaacaaattacatg---aataatgttataaa 24237179  T
Q  139 gtataaacaaactta 153  Q
    |||||||||||||||    
T  24237180 gtataaacaaactta 24237194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 19423994 - 19423923
Alignment:
Q  83 cggtcaccgatatttgattatttttgcacaaattgcatgattaataagggtataaagtataaacaaacttatata 157  Q
    |||||||||||||||||||||||||| |||| || ||||| |||||    |||||||||||||||||||||||||    
T  19423994 cggtcaccgatatttgattatttttggacaatttacatgaataata---ctataaagtataaacaaacttatata 19423923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 328
Target Start/End: Original strand, 21531452 - 21531588
Alignment:
Q  193 gtttatacatgtgcgagtta-gctgccatctcacaatttctatcaacatcacccccaaaattccggtatttaaagggaaatgtaatttcatacaagctat 291  Q
    ||||| |||||||||||| | |||| ||||||  ||||| || |||||||| |   ||||||||||||||| |||| |||||||| ||||||| ||||||    
T  21531452 gtttagacatgtgcgagtgatgctgtcatctccaaatttataccaacatcaactataaaattccggtatttcaaggaaaatgtaagttcatacgagctat 21531551  T
Q  292 tcgaggaattggccaataaaaccagaagcttaaaaca 328  Q
    | || ||||| |||||||||  | ||||| |||||||    
T  21531552 ttgaagaattagccaataaattcggaagcataaaaca 21531588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 13726570 - 13726429
Alignment:
Q  11 tcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattat-ttttgc 109  Q
    ||||||||||||| |||| ||  ||||  |||||||||||||  |||||| |||||   |||||| | ||||||||||| ||||||||||||| |||||     
T  13726570 tcggatagcggtgtgtagtggacgacctcaaaagtgggatag--ggatagcgtatagcagtatgaaatatagcggtcactgatatttgattattttttgg 13726473  T
Q  110 acaaattgcatgattaataagggtataaagtataaacaaacttatata 157  Q
    ||||||| ||||| |||||    |||||| ||||||||||||||||||    
T  13726472 acaaattacatgaataata---ctataaa-tataaacaaacttatata 13726429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 2898580 - 2898542
Alignment:
Q  69 ggtatgacaaatagcggtcaccgatatttgattattttt 107  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  2898580 ggtatgacaaatagcggtcaccgaaatttgattattttt 2898542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 21530313 - 21530272
Alignment:
Q  340 caatttctatcaacatcaccccgaaaattccggtatttaaag 381  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  21530313 caatttctaccaacatcacccccgaaattccggtatttaaag 21530272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 7 - 157
Target Start/End: Complemental strand, 12050018 - 12049870
Alignment:
Q  7 aatctcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattat-tt 105  Q
    |||||| |||||||||| ||||| |||||||  ||||||||||||| ||||||  |||||  ||||| ||||||||||||||||||||||||||||| ||    
T  12050018 aatctcagatagcggtgcgtagcagctgaccccaaaagtgggatagtgggataacgtatagcggtataacaaatagcggtcaccgatatttgattatgtt 12049919  T
Q  106 ttgcacaaattgcatgattaataagggtataaagtataaacaaacttatata 157  Q
    ||| ||| ||| ||||   ||||| | |||||||||||||||||||||||||    
T  12049918 ttgaacatattacatg---aataatgatataaagtataaacaaacttatata 12049870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 7 - 157
Target Start/End: Complemental strand, 54857219 - 54857071
Alignment:
Q  7 aatctcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattat-tt 105  Q
    |||||||| |||||||| |||| |||  |||  ||||||||||||||||| ||| |||||  ||||||||||||||||||||| ||||||||||||| ||    
T  54857219 aatctcgggtagcggtgcgtagaggccaacctcaaaagtgggatagcgggttagcgtatagcggtatgacaaatagcggtcacagatatttgattatttt 54857120  T
Q  106 ttgcacaaattgcatgattaataagggtataaagtataaacaaacttatata 157  Q
    ||| ||||||| ||||| |||||   ||||||||||||||||||||| ||||    
T  54857119 ttgaacaaattacatgaataata---gtataaagtataaacaaacttttata 54857071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 153
Target Start/End: Complemental strand, 49600523 - 49600380
Alignment:
Q  7 aatctcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattat-tt 105  Q
    ||||||||||||||||| |||| | | ||||  |||||||||||||| || ||| |||||  |||||||||||||| |||||||||||| ||||||| ||    
T  49600523 aatctcggatagcggtgtgtagagtccgacctcaaaagtgggatagcaggttagcgtatagtggtatgacaaatagtggtcaccgatatctgattatttt 49600424  T
Q  106 ttgcacaaattgcatgattaataagggtataaagtataaacaaactta 153  Q
    ||| ||||||| ||    |||||| | |||| ||||||||||||||||    
T  49600423 ttgaacaaattaca----taataatgttatagagtataaacaaactta 49600380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 157
Target Start/End: Original strand, 51850380 - 51850515
Alignment:
Q  12 cggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgatta-tttttgca 110  Q
    |||||||||||| |||||||| ||||  |||||||||||||||        ||||  |||||||||||||||||||||||||||||||||| |||||| |    
T  51850380 cggatagcggtgcgtagcggccgaccccaaaagtgggatagcg--------tatagtggtatgacaaatagcggtcaccgatatttgattattttttgga 51850471  T
Q  111 caaattgcatgattaataagggtataaagtataaacaaacttatata 157  Q
    |||||| ||||| |||||    ||||||| ||| |||||||||||||    
T  51850472 caaattacatgaataata---ttataaagaatagacaaacttatata 51850515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 8368154 - 8368087
Alignment:
Q  40 aaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattattttt 107  Q
    ||||||||||||| ||||||  |||||  ||||||||||||| |||||||| ||||||||| ||||||    
T  8368154 aaaagtgggatagtgggatatcgtatagcggtatgacaaataacggtcaccaatatttgatcattttt 8368087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 3125305 - 3125229
Alignment:
Q  79 atagcggtcaccgatatttgattatttttgc-acaaattgcatgattaataagggtataaagtataaacaaacttatata 157  Q
    |||||||||||||||||||||||||||||   ||||||| ||||| |||||    ||| |||||||||||||||||||||    
T  3125305 atagcggtcaccgatatttgattatttttttgacaaattacatgaataatac---tatgaagtataaacaaacttatata 3125229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 52643563 - 52643510
Alignment:
Q  54 gggatagtgtataagggtatgacaaatagcggtcaccgatatttgattattttt 107  Q
    ||||||| |||||| |||||| |||| ||| |||||||||||||||| ||||||    
T  52643563 gggatagcgtataacggtatgccaaaaagcagtcaccgatatttgatgattttt 52643510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 50741557 - 50741457
Alignment:
Q  7 aatctcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattatttt 106  Q
    |||| ||||||||||||  ||||||| ||||  ||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||    
T  50741557 aatcccggatagcggtgtatagcggccgaccccaaaagtgggatagcgggatagcgtatagcggtatgacaaatagcggtcaccgatatttgattatttt 50741458  T
Q  107 t 107  Q
    |    
T  50741457 t 50741457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 31461080 - 31460933
Alignment:
Q  7 aatctcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattattt- 105  Q
    ||||||||||||| ||| |||||||| ||||  |||||| |||||||||||||| |||||  | |||||||||||| ||| ||||||||||||||||||     
T  31461080 aatctcggatagcagtgcgtagcggccgaccccaaaagttggatagcgggatagagtatagcgttatgacaaatagtggttaccgatatttgattatttg 31460981  T
Q  106 ttgcacaaattgcatgattaataagggtataaagtataaacaaacttatat 156  Q
    ||| | ||||| ||||   ||||| |||||||| |||||||||||||||||    
T  31460980 ttgaataaattacatg---aataatggtataaaatataaacaaacttatat 31460933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 157
Target Start/End: Original strand, 32226045 - 32226184
Alignment:
Q  7 aatctcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattatttt 106  Q
    ||||||||||||||||| |||||||| ||||  |||||||||||||||        ||||  ||| |||||||||| |||||||||||||||||||||||    
T  32226045 aatctcggatagcggtgtgtagcggccgaccccaaaagtgggatagcg--------tatagcggtttgacaaatagtggtcaccgatatttgattatttt 32226136  T
Q  107 tgcacaaattgcatgattaataagggtataaagtataaacaaacttatata 157  Q
    |   |||||| ||||   ||||| |||||||||||||||||||||| ||||    
T  32226137 ttggcaaattacatg---aataatggtataaagtataaacaaacttgtata 32226184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 36497199 - 36497133
Alignment:
Q  40 aaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattatttt 106  Q
    |||||||||||||| ||||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  36497199 aaaagtgggatagcaggatagtgtatagcggtatgacaaatagcggtcactgatatttgattatttt 36497133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 36551484 - 36551436
Alignment:
Q  67 agggtatgacaaatagcggtcaccgatatttgattatttttgcacaaat 115  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36551484 agggtatgacaaatagcggtcaccgatatttgattatttttgaacaaat 36551436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 19636188 - 19636104
Alignment:
Q  70 gtatgacaaatagcggtcaccgatatttgatta-tttttgcacaaattgcatgattaataagggtataaagtataaacaaacttatat 156  Q
    |||||||||||||||||| |||||||| ||||| |||||| ||||||| ||||| ||||| |   |||||||||||||||||||||||    
T  19636188 gtatgacaaatagcggtcgccgatattggattattttttggacaaattacatgaataatacg---ataaagtataaacaaacttatat 19636104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 25710793 - 25710839
Alignment:
Q  70 gtatgacaaatagcggtcaccgatatttgattatttttgcacaaatt 116  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||    
T  25710793 gtataacaaatagcggtcaccgatatttgattatttttggacaaatt 25710839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 153
Target Start/End: Complemental strand, 1374880 - 1374736
Alignment:
Q  7 aatctcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattat-tt 105  Q
    ||||||||||||||||| |||| |||  |||  ||||||||||||||||| ||| |||||  |||||||||||||| |||||||||||||||||||| ||    
T  1374880 aatctcggatagcggtgcgtagaggccaacctcaaaagtgggatagcgggttagcgtatagtggtatgacaaatagtggtcaccgatatttgattatttt 1374781  T
Q  106 ttgcacaaattgcatgattaataagggtataaagtataaacaaactta 153  Q
    ||| ||||||| ||||   ||||| | |||||| ||||||||||||||    
T  1374780 ttgaacaaattacatg---aataatgttataaaatataaacaaactta 1374736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 32766506 - 32766406
Alignment:
Q  7 aatctcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattatttt 106  Q
    ||||||||||||||||| |||| ||| ||||  ||||||||||||||||| ||| |||||  |||||||||||||| ||||||| || | ||||||||||    
T  32766506 aatctcggatagcggtgcgtagaggccgacctcaaaagtgggatagcgggttagcgtatagtggtatgacaaatagtggtcacccatgtatgattatttt 32766407  T
Q  107 t 107  Q
    |    
T  32766406 t 32766406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 8117538 - 8117485
Alignment:
Q  54 gggatagtgtataagggtatgacaaatagcggtcaccgatatttgattattttt 107  Q
    ||||||| |||||  ||||||||||||||||||||||||| |||||||||||||    
T  8117538 gggatagcgtatagcggtatgacaaatagcggtcaccgatgtttgattattttt 8117485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 30874594 - 30874679
Alignment:
Q  70 gtatgacaaatagcggtcaccgatatttgattat--ttttgcacaaattgcatgattaataagggtataaagtataaacaaacttatat 156  Q
    |||||||||||| || |||||||||||||||| |  ||||| ||||||| ||||| |||||    |||||||||||||||||| |||||    
T  30874594 gtatgacaaataacgatcaccgatatttgattgttattttggacaaattacatgaataata---ctataaagtataaacaaacatatat 30874679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 29264556 - 29264414
Alignment:
Q  11 tcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattat-ttttgc 109  Q
    |||| |||| ||| ||||||||  |||  |||| |||||||||||||||| |||||  ||||||||||| || |||||||||||||||||||| |||||     
T  29264556 tcggctagcagtgcgtagcggccaaccccaaaaatgggatagcgggatagcgtatagcggtatgacaaaaagtggtcaccgatatttgattattttttgg 29264457  T
Q  110 acaaattgcatgattaataagggtataaagtataaacaaacttata 155  Q
    ||||||| ||||| |||||    |||||||||||||||||||||||    
T  29264456 acaaattacatgaataata---ctataaagtataaacaaacttata 29264414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 7154664 - 7154779
Alignment:
Q  40 aaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattatttttgca--caaattgcatgattaataagggtataa 137  Q
    ||||||||||||||||| ||| |||||  ||||||||||||||  || ||||||||||||||||||||  |  |||||  ||||   |||||||||||||    
T  7154664 aaaagtgggatagcgggttagcgtatagtggtatgacaaatag-tgttaccgatatttgattattttttgaaccaaatgacatg---aataagggtataa 7154759  T
Q  138 agtataaacaaacttatata 157  Q
    ||||||||||||||||||||    
T  7154760 agtataaacaaacttatata 7154779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 17316233 - 17316354
Alignment:
Q  7 aatctcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgatta-ttt 105  Q
    ||||||||||||||| | |||| ||| |||   ||||||||||||||||  ||| |||||| |||||| ||||||| ||||||||||||| ||||| |||    
T  17316233 aatctcggatagcggcgcgtagaggccgacttcaaaagtgggatagcggcttagcgtataatggtatgccaaatagtggtcaccgatattggattatttt 17316332  T
Q  106 ttgcacaaattgcatgattaat 127  Q
    ||| ||||||| ||||| ||||    
T  17316333 ttgaacaaattacatgaataat 17316354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 45709759 - 45709856
Alignment:
Q  54 gggatagtgtataagggtatgacaaatagcggtcaccgatatttgattattttt-gcacaaattgcatgattaataagggtataaagtataaacaaactt 152  Q
    |||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||| | |||||||  | || |||||    ||||||||||||||||||||    
T  45709759 gggatagtgtataacggtataacaaagagcggtcaccggtatttgattatttttaggacaaattataagaataata---ctataaagtataaacaaactt 45709855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 35819441 - 35819382
Alignment:
Q  69 ggtatgacaaatagcggtcaccgatatttgattat-ttttgcacaaattgcatgattaat 127  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||    
T  35819441 ggtattacaaatagcggtcaccgatatttgattattttttgaacaaattacatgaataat 35819382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 12732748 - 12732801
Alignment:
Q  54 gggatagtgtataagggtatgacaaatagcggtcaccgatatttgattattttt 107  Q
    ||||||| |||||  ||||||||||||| |||||||||||||||||| ||||||    
T  12732748 gggatagcgtatagcggtatgacaaataccggtcaccgatatttgatgattttt 12732801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 22575953 - 22576096
Alignment:
Q  7 aatctcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattat-tt 105  Q
    ||||| |||||| | || |||||| | ||||  |||||||||||||| || ||  || ||  ||||||||||||||||||||||||||||||||||| ||    
T  22575953 aatctaggatagtgatgcgtagcgtccgacctcaaaagtgggatagctggttaacgtgtagtggtatgacaaatagcggtcaccgatatttgattatatt 22576052  T
Q  106 ttgcacaaattgcatgattaataagggtataaagtataaacaaactt 152  Q
    ||| ||||||| | ||   ||||| ||||||||||||||||||||||    
T  22576053 ttgaacaaattacttg---aataatggtataaagtataaacaaactt 22576096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 25029748 - 25029647
Alignment:
Q  54 gggatagtgtataagggtatgacaaatagcggtcaccgatatttgatt-atttttgcacaaattgcatgattaataagggtataaagtataaacaaactt 152  Q
    |||||||||||||   |||||||||||||||||||| ||||||||||| ||||||| ||||||| ||||| || ||    ||||||||||||||||||||    
T  25029748 gggatagtgtatagcagtatgacaaatagcggtcacggatatttgattaatttttggacaaattacatgaatatta---ctataaagtataaacaaactt 25029652  T
Q  153 atata 157  Q
    |||||    
T  25029651 atata 25029647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 14362366 - 14362266
Alignment:
Q  7 aatctcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattatttt 106  Q
    |||||||| ||||||||  ||| ||| ||||  ||||| ||||||||||| ||| ||| |   ||||||||||| |||||||||||||||||||||||||    
T  14362366 aatctcgggtagcggtgcttagaggccgaccttaaaagagggatagcgggttagcgtacagcagtatgacaaattgcggtcaccgatatttgattatttt 14362267  T
Q  107 t 107  Q
    |    
T  14362266 t 14362266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 157
Target Start/End: Complemental strand, 13341721 - 13341638
Alignment:
Q  73 tgacaaatagcggtcaccgatatttgattat-ttttgcacaaattgcatgattaataagggtataaagtataaacaaacttatata 157  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |||||  |   |||||||||||||||||| ||||    
T  13341721 tgacaaatagcggtcaccgatatttgattattttttggacaaattacatgaataatactg--ttaaagtataaacaaacttgtata 13341638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 27707899 - 27707993
Alignment:
Q  54 gggatagtgtataagggtatgacaaatagcggtcaccgata-tttgatta-tttttgcacaaattgcatgattaataagggtataaagtataaacaaa 149  Q
    ||||||| |||||  ||||||||||||||||||||| |||| |||||||| |||||| ||||||| ||||| |||||    |||||||||||||||||    
T  27707899 gggatagcgtatagcggtatgacaaatagcggtcactgatattttgattattttttggacaaattacatgaataata---ctataaagtataaacaaa 27707993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 28855541 - 28855447
Alignment:
Q  57 atagtgtataagggtatgacaaatagcggtcaccgatatttgat--tatttttgcacaaattgcatgattaataagggtataaagtataaacaaactt 152  Q
    ||||||||||   ||||||||||||||||||| | |||||||||  | |||||| ||||||| ||||| |||||    |||| |||||||||||||||    
T  28855541 atagtgtatagctgtatgacaaatagcggtcatcaatatttgatcatttttttggacaaattacatgaataata---ttatagagtataaacaaactt 28855447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 338
Target Start/End: Original strand, 29675532 - 29675680
Alignment:
Q  191 aggtttatacatgtgcgagtta-gctgccatctcacaatttctatcaacatcacccccaaaattccggtatttaaagggaaatgtaatttcatacaagct 289  Q
    ||||||||||||||| |||| | |||| ||||||  ||||| || |||| ||| | || ||||||| || ||  || | |||||||||||||||   |||    
T  29675532 aggtttatacatgtgtgagtgatgctgtcatctccaaatttataccaacgtcaacaccgaaattccagttttacaatgaaaatgtaatttcatatgcgct 29675631  T
Q  290 attcgaggaattggccaataaaaccagaagcttaaaacaacagatgtgt 338  Q
    |||||  ||||| |||||||||  ||| || |||||||||||| |||||    
T  29675632 attcgcagaattagccaataaactcagcagtttaaaacaacaggtgtgt 29675680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 101776 - 101695
Alignment:
Q  12 cggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgat 93  Q
    |||||||||||| |||||||| ||||  |||| |||||||||||||||| |||||  |||||||||| ||||||||||||||    
T  101776 cggatagcggtgtgtagcggcagaccccaaaaatgggatagcgggatagcgtatatcggtatgacaattagcggtcaccgat 101695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 41654360 - 41654225
Alignment:
Q  7 aatctcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattat-tt 105  Q
    ||||| |||||| |||| |||||||| ||||  |||||||||||| |||| ||| || ||  ||||||||||||||| ||||| ||||||||||||| ||    
T  41654360 aatctaggatagtggtgcgtagcggccgacctcaaaagtgggataacgggttagcgtgtagtggtatgacaaatagcagtcactgatatttgattatatt 41654261  T
Q  106 ttgcacaaattgcatgattaataagggtataaagtataa 144  Q
    |||  |||||| ||||   ||||| ||||||||||||||    
T  41654260 ttgaccaaattacatg---aataacggtataaagtataa 41654225  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 30484837 - 30484875
Alignment:
Q  69 ggtatgacaaatagcggtcaccgatatttgattattttt 107  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  30484837 ggtatggcaaatagcggtcaccaatatttgattattttt 30484875  T

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Target: scaffold0252 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 16592 - 16667
Alignment:
Q  54 gggatagtgtataagggtatgacaaatagcggtcaccgatatttgatta-tttttgcacaaattgcatgattaata 128  Q
    ||||||| |||||  ||||||||||||||||||||| |||||||||||| |||||| ||||||| ||||| |||||    
T  16592 gggatagcgtatagaggtatgacaaatagcggtcactgatatttgattattttttggacaaattacatgaataata 16667  T

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Target: scaffold0172 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 30684 - 30751
Alignment:
Q  40 aaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattattttt 107  Q
    |||| |||||||||||||||| |||||   |||||||||| |||||||||||||||||||| ||||||    
T  30684 aaaactgggatagcgggatagggtatagcagtatgacaaacagcggtcaccgatatttgatcattttt 30751  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 2252018 - 2252126
Alignment:
Q  7 aatctcggatagcggtgagtagcggctgaccaaaaaagtgggatagcgggatagtgtataagggtatgacaaatagcggtcaccgatatttgattattt- 105  Q
    ||||||||||||||||| |||||||||||||  ||||||||||||||        |||||  ||||| |||||| | ||||||||||||||||||||||     
T  2252018 aatctcggatagcggtgcgtagcggctgaccccaaaagtgggatagc--------gtatagcggtattacaaatggtggtcaccgatatttgattattta 2252109  T
Q  106 ttgcacaaattgcatga 122  Q
    ||| ||||||| |||||    
T  2252110 ttgaacaaattacatga 2252126  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 31462413 - 31462512
Alignment:
Q  54 gggatagtgtataagggtatgacaaatagcggtcaccgatatttgattatttttgc-acaaattgcatgattaataagggtataaagtataaacaaactt 152  Q
    ||||||||||||| |  |||||||||||| ||||||||||||||||||||||||   ||||| | ||||| |||||    ||||| ||||||||||||||    
T  31462413 gggatagtgtatacg--tatgacaaatagtggtcaccgatatttgattatttttttgacaaactacatgaataatac---tataaggtataaacaaactt 31462507  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 8152549 - 8152512
Alignment:
Q  70 gtatgacaaatagcggtcaccgatatttgattattttt 107  Q
    |||||||||||||||||||| |||||||||||||||||    
T  8152549 gtatgacaaatagcggtcactgatatttgattattttt 8152512  T

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Target: scaffold0380 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 10458 - 10559
Alignment:
Q  54 gggatagtgtataagggtatgacaaatagcggtcaccgatatttgatta-tttttgcacaaattgcatgattaataagggtataaagtataaacaaactt 152  Q
    ||||||| |||||  ||||||||| |||||||||||||||||||||||| |||||| ||||||  ||| | |||||    |||||||||||||||||| |    
T  10458 gggatagcgtatagcggtatgacatatagcggtcaccgatatttgattattttttggacaaataacatcaataata---ctataaagtataaacaaacct 10554  T
Q  153 atata 157  Q
    |||||    
T  10555 atata 10559  T

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Target: scaffold0072 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 6011 - 6107
Alignment:
Q  55 ggatagtgtataagggtatgacaaatagcggtcaccgatatttgattattttt-gcacaaattgcatgattaataagggtataaagtataaacaaactta 153  Q
    |||||| |||||  |||||||||||||||||||||| |||||||||||||||| | | ||||| ||||| ||||   | ||| |||||||||||||||||    
T  6011 ggatagcgtatagcggtatgacaaatagcggtcaccaatatttgattattttttggaaaaattacatgaataat---gctatgaagtataaacaaactta 6107  T

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