View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_22 (Length: 368)
Name: NF20316_low_22
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 13472643 - 13472283
Alignment:
| Q |
18 |
cttaataataattttatcaagttatttgtatgcaaatttgctttctctgctttgttaatttatactaatgttgatgtaatgaaagaagtaatagtatgaa |
117 |
Q |
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| T |
13472643 |
cttaataataattttatcaagttatttgtatgcaaatttgctttctctgctttgctaatttatactaatgttgatgtaatgaaagaagtaatagtatgaa |
13472544 |
T |
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| Q |
118 |
ttctac-----------------tatgtttgctttgtgtattacttactttttagtacgtccaagtgaagtatgttcaagcgagaatcaaacaaaatcga |
200 |
Q |
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| T |
13472543 |
ttctacctgtgatatgcatgcactatgtttgctttgtgtattacttactttttagtacgtccaagtgaagtatgttcaagcgagaatcaaacaaaatcga |
13472444 |
T |
|
| Q |
201 |
tagtctttaaataatattttttggactaaatgtagaagcatatactatgttgcgaatatattattatatataaacctcaaataggtcgatgaagctttaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13472443 |
tagtctttaaataatattttttggactaaatgtagaagcata---tatgttgcgaatatattattatatataaacctcaaataggtcgatgaagctttaa |
13472347 |
T |
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| Q |
301 |
acagtcctatatgtagaagcaaggttcctttgacacggaagacaacgaggtattcttctctctc |
364 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| |
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| T |
13472346 |
acagtcctatatgtagaagcaaggttcctttgacacaaaagacaacgaggcattcttctttctc |
13472283 |
T |
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