View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_24 (Length: 356)
Name: NF20316_low_24
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 31 - 344
Target Start/End: Complemental strand, 27726078 - 27725765
Alignment:
| Q |
31 |
gtcttttgggatatatattaccatgcaggaaggggtttcttcactagcaagggattgagattaattgacagtttgaatataagttgttgtcccaaataga |
130 |
Q |
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| T |
27726078 |
gtcttttgggatatatattaccatgcaggaaggggtttcttgactagcaagttattgagattaattgacagtttgcatataagttgaggtcccaaataga |
27725979 |
T |
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| Q |
131 |
gtaggatccattgcaaatcttgaccagtaatgttgaatgctcctcaattccatcaccagtaacatgtattgaataattacatagggaaggttcaattcga |
230 |
Q |
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| T |
27725978 |
gtaggatccattgcaaatcttgaccagtaatgttgaatgctcctcaattccatcaccagtaacatgcattgaataattacatagggaaggttcaattcga |
27725879 |
T |
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| Q |
231 |
agcaatgaaacatgtgattcatcacaaagcaccatttacttaacatcgtttgagttattaggaatttaaaggggctatactccaacaaggacaaggcagt |
330 |
Q |
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| T |
27725878 |
agcaatgaaacatgtgattcatcacaaagcaccatttacttaacatcgtttgagttattaggaatttaaagggactatactccaacaaggacaaggcagt |
27725779 |
T |
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| Q |
331 |
gaatatgaaacaaa |
344 |
Q |
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| T |
27725778 |
gaatatgaaacaaa |
27725765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 84 - 264
Target Start/End: Complemental strand, 27737723 - 27737524
Alignment:
| Q |
84 |
attgagattaattgacagtttgaatataagttgttgtcccaaatagagtaggatccattgcaaatcttgaccagt-------------aatgttgaatgc |
170 |
Q |
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| T |
27737723 |
attgagatttattgtcagtttgcatataagttgagatcccaaatagagtaggatccattgcaaatcttgaccattggatgagttagacaatgttgaatgc |
27737624 |
T |
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| Q |
171 |
tcctcaattccat-----caccagtaaca-tgtattgaataattacatagggaaggttcaattcgaagcaatgaaacatgtgattcatcacaaagcacca |
264 |
Q |
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| T |
27737623 |
tcctcaattgcattgcatcaccaagcactgtgtattgaataattacatagggaaggttcaatttgaagcaatgaaacatgtgattcatcaccaagcacca |
27737524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 27737514 - 27737462
Alignment:
| Q |
291 |
ggaatttaaaggggctatactccaacaaggacaaggcagtgaatatgaaacaaa |
344 |
Q |
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| T |
27737514 |
ggaatttaaagggact-tactccaacaaggacaaggcagtgaatatgaaacaaa |
27737462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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