View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_25 (Length: 352)
Name: NF20316_low_25
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 30 - 332
Target Start/End: Original strand, 38074786 - 38075087
Alignment:
| Q |
30 |
aaagagataagaggataatggataacccaatcaatctaaaacccataatgtgccatgaaatgatggttagttaatgtattacccaatcaatggttgcata |
129 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38074786 |
aaagaggtaagaggataatggataacccaatcaatctaaaacccataatgtgccatgaaatgatggttagttaatgtattacccaatcaatggttgcata |
38074885 |
T |
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| Q |
130 |
cttaactaaaacaccgcacgccattcaaactaaaaacttaggtcaacaaacctggacatgaacacgttaagcaatgcatggttgattcgtagatgcttgt |
229 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38074886 |
cttaactaaaacaccgcacgccattcaaactaaaa-cttaggtcaacaaacctggacatgaacacgttaagcaatgcatggttgattcgtagatgcttgt |
38074984 |
T |
|
| Q |
230 |
attaacacataatattagaaaataaattatacagcaatgacgcttaaacagttaattgagttaatcatttgattaaaaattctagtttacgctgcctttc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38074985 |
attaacacataatattagaaaataaattatacagcaatgacgcttaaacagttaattgagttaatcatttgattaaaagttctagtttacgctgcctttc |
38075084 |
T |
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| Q |
330 |
agc |
332 |
Q |
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||| |
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| T |
38075085 |
agc |
38075087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 38074473 - 38074502
Alignment:
| Q |
1 |
aacgatacaagaggatccgaataaaaaata |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
38074473 |
aacgatacaagaggatccgaataaaaaata |
38074502 |
T |
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