View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_27 (Length: 339)
Name: NF20316_low_27
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 51454760 - 51455070
Alignment:
| Q |
19 |
ccacaagtccacaagaaacttaaaatcagggagagtaatgctaaggtaacattacatgatcatcactctgttcatttttatatgtttgagtttggcatta |
118 |
Q |
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| T |
51454760 |
ccacaagtcctcaagaaacttaaaatcagggagagtaatgctaaggtaacattacatgatcatcactctgttcatttttatatgtttgagtttggcatta |
51454859 |
T |
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| Q |
119 |
tatgtatgtaattgtggttctgttactgtttttcaatcaacagtggattgaagagggatccttaatgtgtcatcaatgtcagagaaacgataagggcagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51454860 |
tatgtatgtaattgtggttctgttactgtttttcaatcaacagtggattgaagagggatccttaatgtgtcatcaatgtcagagaaacgataagggcagg |
51454959 |
T |
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| Q |
219 |
gttgtcagatgcacaaaatgcaaacggagaagatattgcataccttgtttaaacaattggtacaacttccttaacttctgttttactttgtttaacttgc |
318 |
Q |
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| T |
51454960 |
gttgtcagatgcacaaaatgcaaacggagaagatattgcataccttgtttaaacaattggtacaacttccttaacttctgttttactttgtttaacttgc |
51455059 |
T |
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| Q |
319 |
ttcatcctatg |
329 |
Q |
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| T |
51455060 |
ttcatcctatg |
51455070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 121 - 324
Target Start/End: Original strand, 51496350 - 51496553
Alignment:
| Q |
121 |
tgtatgtaattgtggttctgttactgtttttcaatcaacagtggattgaagagggatccttaatgtgtcatcaatgtcagagaaacgataagggcagggt |
220 |
Q |
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| T |
51496350 |
tgtatgtaattgtgattctgttaatgtttctcaatcaacagtggatcgaagaggaatccttgatgtgccatcaatgtcagagaaatgacaagggcagggt |
51496449 |
T |
|
| Q |
221 |
tgtcagatgcacaaaatgcaaacggagaagatattgcataccttgtttaaacaattggtacaacttccttaacttctgttttactttgtttaacttgctt |
320 |
Q |
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| T |
51496450 |
tgttagatgcacaaaatgcaaacggaaaagatattgcataccatgtttaaacaactggtacaactttatttacttatgttttactttgtttaacttgctt |
51496549 |
T |
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| Q |
321 |
catc |
324 |
Q |
| |
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|||| |
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| T |
51496550 |
catc |
51496553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 148 - 302
Target Start/End: Original strand, 51479399 - 51479553
Alignment:
| Q |
148 |
ttttcaatcaacagtggattgaagagggatccttaatgtgtcatcaatgtcagagaaacgataagggcagggttgtcagatgcacaaaatgcaaacggag |
247 |
Q |
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| T |
51479399 |
ttttcaattaacagtggattgcagaggagtccttaatgtgccatcaatgtcagagaaatgacaagggcagggttgtcagatgcacaaaatgcaaacggaa |
51479498 |
T |
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| Q |
248 |
aagatattgcataccttgtttaaacaattggtacaacttccttaacttctgtttt |
302 |
Q |
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| T |
51479499 |
aagattttgcataccttgtttaaacaattggtacaacttccatcacttctgtttt |
51479553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 7996867 - 7996975
Alignment:
| Q |
95 |
tttatatgtttgagtttggcattatatgt---atgtaattgtggttctgttact-gtttttcaatcaacagtggattgaagagggatccttaatgtgtca |
190 |
Q |
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|||| |||||||||||||| ||||||||| |||||||||| |||||||| | |||||||||||||| |||||||||||||| |||||||| | | || |
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| T |
7996867 |
tttacatgtttgagtttggaattatatgttgcatgtaattgtcattctgttaattgtttttcaatcaacggtggattgaagaggaatccttaacgagcca |
7996966 |
T |
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| Q |
191 |
tcaatgtca |
199 |
Q |
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||||||||| |
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| T |
7996967 |
tcaatgtca |
7996975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 30208553 - 30208492
Alignment:
| Q |
121 |
tgtatgtaattgtggttctgttactgtttttcaatcaacagtggattgaagagggatcctta |
182 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| || |||||||||| || |||||| |
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| T |
30208553 |
tgtatgtaattgtggttctgttactgtttctcaatcaataggggattgaagatgggtcctta |
30208492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 321
Target Start/End: Complemental strand, 30208464 - 30208328
Alignment:
| Q |
189 |
catcaatgtcagagaaacgataagggcagggttgtcagatgcacaaaatgcaaacggagaagatattgcataccttgtttaaacaattg----gtacaac |
284 |
Q |
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||||||||| | ||||| || |||||||||||||| | |||||| |||||| | |||| | || |||||||| |||| | ||| ||| ||||||| |
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| T |
30208464 |
catcaatgtaaaagaaatgacaagggcagggttgtgaaatgcacgaaatgcgaccggaagaaattttgcatactttgtattaaccgttggtacgtacaac |
30208365 |
T |
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| Q |
285 |
ttccttaacttctgttttactttgtttaacttgcttc |
321 |
Q |
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||||||||||| ||||||| | |||||||| |||||| |
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| T |
30208364 |
ttccttaacttatgttttattctgtttaacgtgcttc |
30208328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 27395515 - 27395621
Alignment:
| Q |
150 |
ttcaatcaacagtggattgaagagggatccttaatgtgtcatcaatgtcagagaaacgataagggcagggttgtcagatgcacaaaatgcaaacggagaa |
249 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||| ||||| || | |||||||||||||||||||| ||||||||||||| || |
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| T |
27395515 |
ttcaataaacagtggattgaagaggagtccttaatgtgtcatcaatgtcaaagaaatgacagtggcagggttgtcagatgcaccaaatgcaaacggaaaa |
27395614 |
T |
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| Q |
250 |
gatattg |
256 |
Q |
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| T |
27395615 |
gatattg |
27395621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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