View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_28 (Length: 335)
Name: NF20316_low_28
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 137 - 316
Target Start/End: Original strand, 112455 - 112636
Alignment:
| Q |
137 |
ttattctaataaaagaaaacattgcattgtctaagacatgttatgtatttgaccattaatccataactcaagtaggnnnnnnngtgcaataccacaagaa |
236 |
Q |
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| T |
112455 |
ttattctaataaaagaaaacattgcattgtctaagacatgttatgtatttgaccattaatccataactcaagtaggaaaaaaagtgcaataccacaagaa |
112554 |
T |
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| Q |
237 |
aaagcaaaagatgtattatta-ttttttcatttgtcatgttgtgatcataaccgtaactgtagagg-ggggcgtgtgggata |
316 |
Q |
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| T |
112555 |
aaagcaaaagatgtattattatttttttcatttgtcatgctgtgatcataaccgtaactgtagaggaagggcgtgtgggata |
112636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 112330 - 112389
Alignment:
| Q |
13 |
aatatggggataaaataaataacttaatcaacgatg-tatacatttctgggcagaagtat |
71 |
Q |
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| T |
112330 |
aatatggggataaaataaataacttaatcaacgatgttatacatttctgggcagaagtat |
112389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 55133532 - 55133470
Alignment:
| Q |
150 |
agaaaacattgcattgtctaagacatgttatgtatttgaccattaatccataactcaagtagg |
212 |
Q |
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| T |
55133532 |
agaaaacattgcattaccttagagaggttctgtatttgaccattaatccatagcccaagtagg |
55133470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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