View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_30 (Length: 312)
Name: NF20316_low_30
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 34955903 - 34956190
Alignment:
| Q |
18 |
taattgagtgttagaaaaaatttccatttcaaccgtgaccatgcttgaaactgtggtggatgaaacggatgtgaagaacaaatctaaannnnnnngtgtt |
117 |
Q |
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| T |
34955903 |
taattgagtgttagaaaaaattcccatttcaaccgtgaccatgcttgaaactgtggtggatgaaacggatgtgaagaacaaatctaaatttttttgtgtt |
34956002 |
T |
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| Q |
118 |
tgacctaagggtttaagagctttgagaaatccaaaacccaaagttgaaatggatatgaaatatacaatttgaacacatagtgggtttgatcttaggagga |
217 |
Q |
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| T |
34956003 |
tgacctaagggttttagagctttgagaaatccaaaacccaaagttgaaatggatatgaaatatacaatttgaacacatagtgggtttgatcttaggagga |
34956102 |
T |
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| Q |
218 |
tgaatcgatataaacatgctgctgagatatatattgatttgcttagacacacaagtttttggcatgaagtgcttaggatattcatctc |
305 |
Q |
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| T |
34956103 |
tgaatcgatataaacatgctgctgagatatatattgatttgcttagacacacaagtttttggcatgaagtgcttaggatattcatctc |
34956190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 34974365 - 34974605
Alignment:
| Q |
18 |
taattgagtgttagaaaaaatttccatttcaaccgtgaccatgcttgaaactgtggtggatgaaacggatgtgaagaacaaatctaaannnnnnngtgtt |
117 |
Q |
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| T |
34974365 |
taattgagggttagaaaaattttgcatttcaaccgtggacatgcttgaaactgtggtggctgaaatggatgtgaagaacaaatctaaatttttaggtgtt |
34974464 |
T |
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| Q |
118 |
tgacctaagggtttaagagctttgagaaatccaaaacccaaagttgaaatggatatgaaatatacaatttgaacacatagtgggtttgatcttaggagga |
217 |
Q |
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| T |
34974465 |
tcacctaaaggttttagaactttgagaaatccaaaacccaaagttgaaagagatgtgaaatatacaatttgaacccataatgggtttgctcttaggagga |
34974564 |
T |
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| Q |
218 |
tgaatcgatataaacatgctgctgagatatatattgatttg |
258 |
Q |
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| T |
34974565 |
tgaagcgacaaaaacatgctgctaagaaaaaaattgatttg |
34974605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 35035089 - 35035308
Alignment:
| Q |
18 |
taattgagtgttagaaaaaatttccatttcaaccgtgaccatgcttgaaactgtggtggatgaaacggatgtgaagaacaaatctaaannnnnnng---t |
114 |
Q |
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| T |
35035089 |
taattgagggttagaaaaaaattccatttcaaccgtggacatgcttgaaactgtggtggatgaaacggatgtgaagaacaaatctaagtttttaggtgat |
35035188 |
T |
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| Q |
115 |
gtttgacctaagggtttaagagctttgagaaatccaaaacccaaagttgaaatggatatgaaatatacaatttgaacacatagtgggtttgatcttagga |
214 |
Q |
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|||||| ||| || || |||||||||||||||||||| || ||| ||||| || |||||||||| |||||||||||||| ||| |||| |||||||| |
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| T |
35035189 |
gtttgatataaagggtttagagctttgagaaatccaaacccaaaaaaggaaatagagatgaaatatagaatttgaacacataatggatttgctcttagga |
35035288 |
T |
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| Q |
215 |
ggatgaatcgatataaacat |
234 |
Q |
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||||||| ||||| |||||| |
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| T |
35035289 |
ggatgaagcgataaaaacat |
35035308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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