View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_33 (Length: 293)
Name: NF20316_low_33
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_33 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 49583718 - 49583443
Alignment:
| Q |
18 |
ccaggaacaagaatctgccctttatgttcatgctcctcatgcatcccaatctttgtttcttcccgaatatcataactctttatccaagttattgggatag |
117 |
Q |
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| T |
49583718 |
ccaggaacaagaatctgccctttatgttcatgctcctcatgcatcccaatctttgtttcttcccgaatatcataactctttatccaagttattgggatag |
49583619 |
T |
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| Q |
118 |
gtaatgctatttgaaagttgtggtgtatactttctgcctcggtgttattttgcaacaaaatatactcagactttgaaattaaaattggaagttcagcctg |
217 |
Q |
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| T |
49583618 |
gtaatcctatttgaaagttgtggtgtatactttctgcctcggtgttattttgcaacaaaatatactcagactttgaaattaaaattggaagttcagcctg |
49583519 |
T |
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| Q |
218 |
gtaaatttcacccacctcaacagatgtttccggatcatcaaaaacaccatatttaatggaccacggaagtgattgt |
293 |
Q |
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| T |
49583518 |
gtaaatttcacccacctcaacagatgtttccggatcatcaaaaacaccatatttaatggaccacggaagtgattgt |
49583443 |
T |
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