View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_34 (Length: 292)
Name: NF20316_low_34
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 10 - 269
Target Start/End: Original strand, 32687950 - 32688213
Alignment:
| Q |
10 |
agcaaagggaaaaggagtgaagtcatgttattgttatcaatataaataaacaaactctatcaacatataatccaaacnnnnnnntatatattaccttcta |
109 |
Q |
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| T |
32687950 |
agcaaagagaaaaggagtgaagtcatgttattgttatcaatataaataaacaaactctatcaacatataatccaaacaacaaaaaatgtattaccttcta |
32688049 |
T |
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| Q |
110 |
gaaattgaaacaaagnnnnnnnngagtgttgaatctgtcttggagctttgaaaaatga-tgaaatagagctaggatgctcctgcaaagatagtttatctc |
208 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | |
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| T |
32688050 |
gaaattgaaacaaagaaaaaaaagagtgttgaatctgtcttggagctttgaaaaatgaatgaaatagagctaggatgctcctgcaaagacagtttatcac |
32688149 |
T |
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| Q |
209 |
tggttcatcaacaaggcgcaacaaga----ttaatctaaggaaaaacaagtaatttaatgttgtt |
269 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
32688150 |
tggttcatcaacaaggcgcaacaagatggtttaatct-aggaaaaacaagtaatttaatgttgtt |
32688213 |
T |
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