View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20316_low_35 (Length: 290)

Name: NF20316_low_35
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20316_low_35
NF20316_low_35
[»] chr8 (5 HSPs)
chr8 (18-272)||(5057255-5057509)
chr8 (22-114)||(41444936-41445028)
chr8 (238-272)||(13058075-13058109)
chr8 (22-91)||(42854668-42854737)
chr8 (50-114)||(25985128-25985192)
[»] chr6 (3 HSPs)
chr6 (22-91)||(5258805-5258874)
chr6 (22-91)||(5631375-5631444)
chr6 (22-75)||(33495765-33495818)
[»] chr3 (4 HSPs)
chr3 (22-95)||(19757542-19757615)
chr3 (37-104)||(44395003-44395070)
chr3 (49-89)||(28398124-28398164)
chr3 (30-73)||(50630001-50630045)
[»] chr1 (2 HSPs)
chr1 (27-93)||(46226965-46227031)
chr1 (27-91)||(32083400-32083464)
[»] chr7 (2 HSPs)
chr7 (33-111)||(20499664-20499742)
chr7 (22-91)||(32630165-32630234)
[»] chr5 (2 HSPs)
chr5 (22-75)||(3394269-3394322)
chr5 (129-173)||(15370792-15370836)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 5057255 - 5057509
Alignment:
Q  18 aattcttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaaggcaaaacatttctaacttagaggtcca 117  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5057255 aattcttagaagtgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaaggcaaaacatttctaacttagaggtcca 5057354  T
Q  118 tagtagaacagtacaaaatgatggagaaatagaaaatgtaaagtattgaattcaagtgggattgttggactgaagaagggctgcatgtgatacaaaagta 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5057355 tagtagaacagtacaaaatgacggagaaatagaaaatgtaaagtattgaattcaagtgggattgttggactgaagaagggctgcatgtgatacaaaagta 5057454  T
Q  218 gcattcaaatcgaaagaaatgttttatcgtacaactgtaagaccaacaatgttgt 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5057455 gcattcaaatcgaaagaaatgttttatcgtacaactgtaagaccaacaatgttgt 5057509  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 41445028 - 41444936
Alignment:
Q  22 cttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaaggcaaaacatttctaacttagaggt 114  Q
    ||||||||  ||| |||||||| |||||| ||||||   ||||||||| ||||| || ||||||||||||| || ||||||||||||||||||    
T  41445028 cttataaggatattgcttccgcatgagtaaaagcaagataaagtatatggaatgtaattttagcaaaaggcgaagcatttctaacttagaggt 41444936  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 13058075 - 13058109
Alignment:
Q  238 gttttatcgtacaactgtaagaccaacaatgttgt 272  Q
    ||||||||||||||| |||||||||||||||||||    
T  13058075 gttttatcgtacaacagtaagaccaacaatgttgt 13058109  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 42854737 - 42854668
Alignment:
Q  22 cttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaagg 91  Q
    |||| |||||||||| ||||||||||||||||||||  |  ||||||| ||||| || || |||||||||    
T  42854737 cttaaaagcgtatggtttccgcctgagtagaagcaagacggagtatatggaatgtaacttcagcaaaagg 42854668  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 25985128 - 25985192
Alignment:
Q  50 agaagcaaaccaaagtatattgaatgcaagtttagcaaaaggcaaaacatttctaacttagaggt 114  Q
    ||||||||  || ||||||| ||||| ||||||||||| |||| || |||||||| |||||||||    
T  25985128 agaagcaagacagagtatatggaatgtaagtttagcaagaggcgaagcatttctagcttagaggt 25985192  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 5258874 - 5258805
Alignment:
Q  22 cttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaagg 91  Q
    |||| |||||||||||||||||||||||||||||||  |||||||||| ||||| || || |||||||||    
T  5258874 cttagaagcgtatggcttccgcctgagtagaagcaagacaaagtatatggaatgtaacttcagcaaaagg 5258805  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 5631375 - 5631444
Alignment:
Q  22 cttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaagg 91  Q
    |||| ||| |||||| |||||| |||||||||||||  |||||||||| ||||| || || |||||||||    
T  5631375 cttagaagagtatggtttccgcatgagtagaagcaagacaaagtatatggaatgtaacttcagcaaaagg 5631444  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 33495765 - 33495818
Alignment:
Q  22 cttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatg 75  Q
    |||| |||||||||| ||||||||||||||||||||  || ||||||| |||||    
T  33495765 cttaaaagcgtatggtttccgcctgagtagaagcaagacagagtatatggaatg 33495818  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 19757542 - 19757615
Alignment:
Q  22 cttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaaggcaaa 95  Q
    |||| ||||||||||| ||||||| |||||||||||  || ||||||| ||||| || ||||||||||||||||    
T  19757542 cttagaagcgtatggcatccgccttagtagaagcaagacagagtatatggaatgtaactttagcaaaaggcaaa 19757615  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 44395003 - 44395070
Alignment:
Q  37 cttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaaggcaaaacatttcta 104  Q
    |||||||||  ||||||||||   | ||||||| |||||||| |||||||||||||||| ||||||||    
T  44395003 cttccgcctatgtagaagcaagatagagtatatggaatgcaactttagcaaaaggcaaagcatttcta 44395070  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 28398164 - 28398124
Alignment:
Q  49 tagaagcaaaccaaagtatattgaatgcaagtttagcaaaa 89  Q
    ||||||||||||| ||||||| |||||||| ||||||||||    
T  28398164 tagaagcaaaccatagtatatggaatgcaattttagcaaaa 28398124  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 50630045 - 50630001
Alignment:
Q  30 cgtatggcttccgcctgagtag-aagcaaaccaaagtatattgaa 73  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||||    
T  50630045 cgtatggcctccgcctgagtagaaagcaaaacaaagtatattgaa 50630001  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 46227031 - 46226965
Alignment:
Q  27 aagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaaggca 93  Q
    |||||||||| ||||||||||||||||||||| |||||| |||  |||| || || |||||||||||    
T  46227031 aagcgtatggtttccgcctgagtagaagcaaaacaaagtttatgaaatgtaacttcagcaaaaggca 46226965  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 32083464 - 32083400
Alignment:
Q  27 aagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaagg 91  Q
    |||||||||| ||||||||||||||||||||  |  ||||||| ||||| || || |||||||||    
T  32083464 aagcgtatggtttccgcctgagtagaagcaagacggagtatatggaatgtaacttcagcaaaagg 32083400  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 20499664 - 20499742
Alignment:
Q  33 atggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaaggcaaaacatttctaacttaga 111  Q
    |||||||| ||||||| ||||| |||||| ||||||| || || || ||||||||||||| || | |||||| ||||||    
T  20499664 atggcttctgcctgagcagaagaaaaccagagtatatggagtgtaattttagcaaaaggcgaagcgtttctagcttaga 20499742  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 32630165 - 32630234
Alignment:
Q  22 cttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaagg 91  Q
    |||| |||||||||| ||||||||||||||||||||  |  ||||||| ||||| || || |||||||||    
T  32630165 cttagaagcgtatggtttccgcctgagtagaagcaagacggagtatatggaatgtaacttcagcaaaagg 32630234  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 3394269 - 3394322
Alignment:
Q  22 cttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatg 75  Q
    |||| |||||||||| ||||||||||||||||||||  || ||||||| |||||    
T  3394269 cttagaagcgtatggtttccgcctgagtagaagcaagacagagtatatggaatg 3394322  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 15370836 - 15370792
Alignment:
Q  129 tacaaaatgatggagaaatagaaaatgtaaagtattgaattcaag 173  Q
    |||||||||| ||| ||||||||||||||||  ||||||||||||    
T  15370836 tacaaaatgacggataaatagaaaatgtaaaccattgaattcaag 15370792  T

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