View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_39 (Length: 268)
Name: NF20316_low_39
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 15070555 - 15070389
Alignment:
| Q |
48 |
atattaattaa-tatcaatgataaattgtgagtttggtcacaaagcttttgaaattaaatacaaatttgaataataaatgcttgcacattatttaataac |
146 |
Q |
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| T |
15070555 |
atattaattaaatatctatgataaattgtgagtttggtcacaaagcttttgaaattaaatacaaatttgaataataaatgcttgcacattatttaataac |
15070456 |
T |
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| Q |
147 |
c-nnnnnnnaccaaaatttattatttaataaccgataaagttttaattggagttgaaacgaaagtat |
212 |
Q |
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| T |
15070455 |
ctttttttgaccaaaatttattatttaataaccgataaagttttaattggagttgaaacgagagtat |
15070389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 49 - 203
Target Start/End: Complemental strand, 15063830 - 15063674
Alignment:
| Q |
49 |
tattaattaa-tatcaatgataaattgtgagtttggtcacaaagcttttgaaattaaatacaaatttgaataataaatgcttgcacattatttaataa-c |
146 |
Q |
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| T |
15063830 |
tattaattaaatatctatgataaattgtgagtttggtcacaaagattttgaaattaaatacaaatttgaataataaatgcttgcacattatttaataatc |
15063731 |
T |
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| Q |
147 |
cnnnnnnnaccaaaatttattatttaataaccgataaagttttaattggagttgaaa |
203 |
Q |
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| T |
15063730 |
tttttctgaccaaaatttattatttaataacctatgtaggtttaattggagttgaaa |
15063674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 15070370 - 15070312
Alignment:
| Q |
196 |
agttgaaacgaaagtatagaaagcattatattaaaaagttgaaataacaacgagtatta |
254 |
Q |
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| T |
15070370 |
agttgaaacgagagtatagaaagcattacattaaaaagttgaaataacaaagagtatta |
15070312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 254
Target Start/End: Original strand, 30855024 - 30855162
Alignment:
| Q |
116 |
aataataaatgcttgcacattatttaataaccnnnnnnnaccaaaatttattatttaataaccgataaagttttaattggagttgaaacgaaagtataga |
215 |
Q |
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| T |
30855024 |
aataatcaatgcttgcacattatttaataaccttttttgacaaaaatttaatatttaataacctaggaaggtttaattgaagttgaaatgaaagtgtaga |
30855123 |
T |
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| Q |
216 |
aagcattatattaaaaagttgaaataacaacgagtatta |
254 |
Q |
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| T |
30855124 |
aagaattaatttaaaaagttgaaataacaataagtatta |
30855162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 30859418 - 30859462
Alignment:
| Q |
60 |
atcaatgataaattgtgagtttggtcacaaagcttttgaaattaa |
104 |
Q |
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| T |
30859418 |
atcaatgataaattgtgagtttggtcccaaaactttaaaaattaa |
30859462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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