View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_4 (Length: 627)
Name: NF20316_low_4
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 10 - 613
Target Start/End: Complemental strand, 33441397 - 33440794
Alignment:
| Q |
10 |
aagaagaagaaaaactgtttcaaactggcaaaaatgctatgcactgaaaatctataacagcatgaattagagaaaaatatagaagaaaatgtgcactaag |
109 |
Q |
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| T |
33441397 |
aagaagaagaaaaactgtttcaaactggcaaaaatgctatgcactgaaaatctataacagcatgaattagagaaaaatatagaagaaaatgtgcactaag |
33441298 |
T |
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| Q |
110 |
aggagtaaaagagagcataatgctgcaacttgtaccttgcaaaacgtagcatgaagaagactttaacaagttttaatttggtgtgaaaatgtagttggaa |
209 |
Q |
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| T |
33441297 |
aggagtaaaagagagcataatgctgcaacttgtaccttgcaaaacgtagcatgaagaagactttaacaagtttt-----ggtgtgaaaatgtagttggaa |
33441203 |
T |
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| Q |
210 |
ggtgaaagtgaaagaaatgagaa--------tggctggtaagttgctagaaaaagtactttgaacggatatttgtcataggatgcttaacatctccaccg |
301 |
Q |
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| T |
33441202 |
ggtgaaagtgaaagaaatgagaaaatgagaatggctggtaagttgctagaaaaagtactttgaacggatatttgtcataggatgcttaacatctccaccg |
33441103 |
T |
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| Q |
302 |
acagctcataatatatataaagttccaaacctattattaattatttagcttagatgttaccataaagttaaaacaaaaataaataaccacattcacatca |
401 |
Q |
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| T |
33441102 |
acagctcataatatatataaagttccaaacctattattaattatttagcttagatgttaccataaagttaaaacaaaaataaataaccacattcacatta |
33441003 |
T |
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| Q |
402 |
ttattataaacatgtgatggagtgaaagagaagctagcaacagtgtagataattggtgatatatggatggtatggtagaggaaagtcataaggacacatt |
501 |
Q |
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| T |
33441002 |
ttattataaacatgtgatggagtgaaagagaagctagcaacagtgtagataattggtgatat----atggtatggtagaggaaagtcataaggacacatt |
33440907 |
T |
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| Q |
502 |
tgtagtggtagtattatataggtgagacccacctacattga-nnnnnnngtcatgaaatatggtaaaggctatcactgccgcannnnnnnggtatcgcgc |
600 |
Q |
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| T |
33440906 |
tgtagtggtagtattatataggtgagacccacctacattgattttttttgtcatgaaatatggtaaaggctatcactgccacatttttttggtatcgcgc |
33440807 |
T |
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| Q |
601 |
aagagagatagtt |
613 |
Q |
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| T |
33440806 |
aagacagatagtt |
33440794 |
T |
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