View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20316_low_41 (Length: 246)

Name: NF20316_low_41
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20316_low_41
NF20316_low_41
[»] chr4 (56 HSPs)
chr4 (20-238)||(27444749-27444967)
chr4 (32-238)||(27431103-27431309)
chr4 (20-238)||(27554276-27554494)
chr4 (20-229)||(27498382-27498591)
chr4 (28-221)||(27557464-27557657)
chr4 (20-231)||(27526074-27526285)
chr4 (28-223)||(27486958-27487153)
chr4 (20-215)||(27505680-27505875)
chr4 (20-229)||(27501284-27501493)
chr4 (34-231)||(27513738-27513935)
chr4 (20-223)||(27479868-27480071)
chr4 (28-223)||(27523373-27523568)
chr4 (37-222)||(27516580-27516765)
chr4 (28-215)||(27469435-27469622)
chr4 (28-231)||(27473867-27474070)
chr4 (32-206)||(17970278-17970452)
chr4 (28-193)||(27425787-27425952)
chr4 (28-193)||(27570049-27570214)
chr4 (27-223)||(27476661-27476857)
chr4 (28-212)||(27500319-27500503)
chr4 (37-231)||(27466805-27466999)
chr4 (20-229)||(27502771-27502980)
chr4 (34-200)||(27414297-27414463)
chr4 (64-215)||(27460489-27460640)
chr4 (28-200)||(27415599-27415768)
chr4 (19-193)||(27563346-27563520)
chr4 (80-193)||(27412691-27412804)
chr4 (80-212)||(27567282-27567414)
chr4 (80-194)||(27411455-27411569)
chr4 (121-215)||(27502113-27502207)
chr4 (28-200)||(27585663-27585835)
chr4 (37-192)||(27571607-27571762)
chr4 (37-210)||(27419054-27419227)
chr4 (28-193)||(27420383-27420548)
chr4 (20-229)||(27507777-27507986)
chr4 (37-193)||(27485943-27486099)
chr4 (37-193)||(27506682-27506838)
chr4 (37-192)||(27478884-27479039)
chr4 (95-193)||(27503964-27504062)
chr4 (37-194)||(27424513-27424670)
chr4 (37-210)||(27556362-27556535)
chr4 (37-200)||(27421924-27422091)
chr4 (37-210)||(27559223-27559396)
chr4 (113-189)||(27490020-27490096)
chr4 (28-191)||(27565953-27566116)
chr4 (95-193)||(27468327-27468425)
chr4 (95-193)||(27524566-27524664)
chr4 (95-192)||(27475580-27475677)
chr4 (95-200)||(27514933-27515038)
chr4 (35-207)||(27423204-27423376)
chr4 (163-200)||(27495646-27495683)
chr4 (163-200)||(27600663-27600700)
chr4 (37-193)||(27497322-27497478)
chr4 (37-173)||(27527145-27527281)
chr4 (97-188)||(27508896-27508987)
chr4 (156-212)||(27446250-27446306)
[»] chr3 (14 HSPs)
chr3 (32-223)||(38040051-38040242)
chr3 (32-223)||(38028736-38028927)
chr3 (32-223)||(38036763-38036954)
chr3 (32-224)||(50904761-50904953)
chr3 (32-224)||(38024844-38025036)
chr3 (32-224)||(38031296-38031488)
chr3 (32-224)||(55084765-55084957)
chr3 (32-224)||(50909939-50910131)
chr3 (32-224)||(38033744-38033940)
chr3 (32-193)||(38043882-38044043)
chr3 (31-209)||(48840696-48840873)
chr3 (32-209)||(50911853-50912030)
chr3 (28-106)||(50913471-50913549)
chr3 (163-210)||(38035165-38035212)
[»] chr8 (3 HSPs)
chr8 (32-223)||(21604724-21604915)
chr8 (32-224)||(21607265-21607457)
chr8 (118-209)||(21634608-21634699)
[»] chr2 (1 HSPs)
chr2 (32-206)||(3073548-3073722)
[»] chr5 (4 HSPs)
chr5 (20-229)||(1754206-1754414)
chr5 (58-223)||(1759253-1759422)
chr5 (31-193)||(1756757-1756919)
chr5 (84-200)||(1754719-1754835)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 56)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 27444967 - 27444749
Alignment:
Q  20 caaaaggcgtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27444967 caaaaggcgtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatt 27444868  T
Q  120 tcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattact 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27444867 tcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattact 27444768  T
Q  220 tctcgtttgaatctgtgct 238  Q
    |||||||||||||||||||    
T  27444767 tctcgtttgaatctgtgct 27444749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 27431309 - 27431103
Alignment:
Q  32 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattatt 131  Q
    ||||||||||||||||| |||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| ||    
T  27431309 atgtgccaaagggatatattgcagtatatgttggggatgaaatgaagaggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgtt 27431210  T
Q  132 gaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgtttgaat 231  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27431209 gaatcaagccgaggaacaatttggatatgaccatccaaccggtggtctcacaattccttgcagagaagacgttttcttaaatattacttctcgtttgaat 27431110  T
Q  232 ctgtgct 238  Q
    |||||||    
T  27431109 ctgtgct 27431103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 27554276 - 27554494
Alignment:
Q  20 caaaaggcgtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatt 119  Q
    ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||  |||| || |  || |||||| |||| ||    
T  27554276 caaaaggagtggatgtgccaaagggataccttgcagtatatgttggagaggaaatgaagcggtttgtgatatcaatttctttgttaagccaaccatcgtt 27554375  T
Q  120 tcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattact 219  Q
    |||||||||  |||||||||| ||||||||||| |||||||| ||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||    
T  27554376 tcaagaattgctgaatcaagctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttgtagagaagacgttttcttagatattact 27554475  T
Q  220 tctcgtttgaatctgtgct 238  Q
    |||||||||||||||||||    
T  27554476 tctcgtttgaatctgtgct 27554494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 27498382 - 27498591
Alignment:
Q  20 caaaaggcgtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatt 119  Q
    |||||||||||||  |||||||||||||||| |||||||| |||||||||||||||||  | ||||||||||| ||||||||||||| |||| |||| ||    
T  27498382 caaaaggcgtggacatgccaaagggatatctagcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgtt 27498481  T
Q  120 tcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattact 219  Q
     ||||| || ||||| ||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||| |||||||| | ||||||||||| |||    
T  27498482 ccaagacttgttgaaccaagccgaggaacaattcgaatatgatcatccaatgggtggtctcactattccttgcggagaagacatgttcttagatatcact 27498581  T
Q  220 tctcgtttga 229  Q
    ||||||||||    
T  27498582 tctcgtttga 27498591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 28 - 221
Target Start/End: Original strand, 27557464 - 27557657
Alignment:
Q  28 gtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaat 127  Q
    ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||| |||||||||||||||    
T  27557464 gtggatgtgccaaggggatatcttgccgtatatgttggagaggaaatgaagaggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaat 27557563  T
Q  128 tattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttc 221  Q
    |  |||||||||| ||||||||||| | |||||  |||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||    
T  27557564 tgctgaatcaagctgaggaacaatttgaatatgttcatccaatgggtggtctcactattccatgcagagaagatgttttcttagatatcacttc 27557657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 27526285 - 27526074
Alignment:
Q  20 caaaaggcgtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatt 119  Q
    ||||||| || ||||| |||||||||||||| ||||| || ||||||||| |||||||| |||||||||| ||  |||||||||||| |||| | |||||    
T  27526285 caaaaggtgtcgatgttccaaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcatt 27526186  T
Q  120 tcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattact 219  Q
     |||||||| ||||  ||||| ||||||||||| | |||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||| || |||    
T  27526185 ccaagaattgttgagccaagctgaggaacaatttgaatatgatcatccaacgggtggtctcactattccttgcagagaagacgttttcttagagatcact 27526086  T
Q  220 tctcgtttgaat 231  Q
    ||||||||||||    
T  27526085 tctcgtttgaat 27526074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 28 - 223
Target Start/End: Original strand, 27486958 - 27487153
Alignment:
Q  28 gtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaat 127  Q
    ||||| || |||||||||||||| ||||| ||||| |||||| |||||||| |||||||||||||  |||||||||| | |||| |||| ||||||||||    
T  27486958 gtggacgttccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaat 27487057  T
Q  128 tattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 223  Q
    | ||||| ||||| || |||||||| | |||||| ||||||||||||||||| || |||||||||| ||||||| |||||||||||||||||||||    
T  27487058 tgttgaaccaagctgaagaacaatttgaatatgatcatccaatgggtggtcttactattccttgcaaagaagacattttcttagatattacttctc 27487153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 27505875 - 27505680
Alignment:
Q  20 caaaaggcgtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatt 119  Q
    |||||||  |||| ||||||||||| ||||| ||||| ||||| |||||| |||||||| |||||||||| ||  |||||||||||| |||| | |||||    
T  27505875 caaaaggtttggaggtgccaaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcatt 27505776  T
Q  120 tcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatat 215  Q
     |||||||| ||||| ||||| ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||    
T  27505775 ccaagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgcagagaagagattttcttagatat 27505680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 27501284 - 27501493
Alignment:
Q  20 caaaaggcgtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatt 119  Q
    ||||||| || || || |||||||||| ||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||| | |||| |||  ||    
T  27501284 caaaaggtgtcgaggttccaaagggatgtctagcagtatatgttggagaggaaatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtt 27501383  T
Q  120 tcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattact 219  Q
    |||||| || ||||| ||||||||||||||||| | ||| || ||||||| |||||||||||| |||||||| ||||||||| | ||||||||||| |||    
T  27501384 tcaagacttgttgaaccaagccgaggaacaatttgaatacgatcatccaacgggtggtctcactattccttgtagagaagacatgttcttagatatcact 27501483  T
Q  220 tctcgtttga 229  Q
    ||| ||||||    
T  27501484 tcttgtttga 27501493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 34 - 231
Target Start/End: Complemental strand, 27513935 - 27513738
Alignment:
Q  34 gtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattga 133  Q
    |||||||| |||||||| ||||| || || |||||| |||||||| ||||||||||||||||||||||||||| |||| | || || |||||||| ||||    
T  27513935 gtgccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttga 27513836  T
Q  134 atcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgtttgaat 231  Q
    | ||||| || |||||||  | |||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||||||| ||||||    
T  27513835 accaagctgaagaacaatatgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagtattcttagatatcacttctcgcttgaat 27513738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 27479868 - 27480071
Alignment:
Q  20 caaaaggcgtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatt 119  Q
    |||||||  |||| |||||||| || ||||| ||||||||||| |||||| |||||||| | |||||||| ||  |||||||||||| |||| |||||||    
T  27479868 caaaaggtttggacgtgccaaaaggctatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaaacatcatt 27479967  T
Q  120 tcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattact 219  Q
     ||| | || ||||| ||||| ||||||||||| | |||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |    
T  27479968 ccaaaagttgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttagatattaat 27480067  T
Q  220 tctc 223  Q
    ||||    
T  27480068 tctc 27480071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 27523568 - 27523373
Alignment:
Q  28 gtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaat 127  Q
    ||||| || |||||||| ||||| ||||| ||||| |||||| |||||||| |||||||||| ||  ||||||| |||| |||| | ||||| |||||||    
T  27523568 gtggacgttccaaagggctatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacttcattccaagaat 27523469  T
Q  128 tattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 223  Q
    | ||||   |||||||||||||||| | |||||||||||||||||||||||| || |||||||||| ||||||| |||||||||||||||||||||    
T  27523468 tgttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaaagaagacattttcttagatattacttctc 27523373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 37 - 222
Target Start/End: Complemental strand, 27516765 - 27516580
Alignment:
Q  37 ccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatc 136  Q
    |||||||||||||| || || || || ||| |||| |||||||| ||||||||||| |||||||| ||||  |||  |||||| |||||||| ||||| |    
T  27516765 ccaaagggatatctagctgtgtatgtaggaaaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgttgaacc 27516666  T
Q  137 aagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttct 222  Q
    |||| ||||||||||| | |||||||||||||||||| |||||||| |||||||||| |||||| |||||||||||||| ||||||    
T  27516665 aagctgaggaacaatttgaatatgaccatccaatggggggtctcactattccttgcaaagaagaagttttcttagatatcacttct 27516580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 27469435 - 27469622
Alignment:
Q  28 gtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaat 127  Q
    ||||| || |||||||||||||| ||||| ||||| |||||| |||||||| ||||||||||||| |||||||| ||||  ||| ||||||| ||||||     
T  27469435 gtggacgttccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctatatcatatttgaagcaaacatcattacaagaac 27469534  T
Q  128 tattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatat 215  Q
    | ||||  ||||| || |||||||| | |||||| ||||||||||||||||| || |||||||||||||||||  |||||||||||||    
T  27469535 tgttgagccaagctgaagaacaatttgaatatgaacatccaatgggtggtctaactattccttgcagagaagaaattttcttagatat 27469622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 27473867 - 27474070
Alignment:
Q  28 gtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaat 127  Q
    |||| ||| |||||||||||||| || || ||||| |||||||| |||||||| ||||||||||| |||||||| ||||  |||  |||||| |||||||    
T  27473867 gtgggtgttccaaagggatatctagctgtgtacgtaggagaggagatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaat 27473966  T
Q  128 tattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgttt 227  Q
    |  |||  |||   ||||||||||| | |||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| || |||||||| ||    
T  27473967 tgctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcggagaagacgttttcttagacatcacttctcgctt 27474066  T
Q  228 gaat 231  Q
    ||||    
T  27474067 gaat 27474070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 206
Target Start/End: Original strand, 17970278 - 17970452
Alignment:
Q  32 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattatt 131  Q
    |||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |  |||||||||| |||| | ||||||||| | ||  |    
T  17970278 atgtgccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgct 17970377  T
Q  132 gaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgtttt 206  Q
    || ||  || |||||| |||||||||| || |||||||||||||| |||||||||||||||| |||||| |||||    
T  17970378 gagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgtttt 17970452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 193
Target Start/End: Original strand, 27425787 - 27425952
Alignment:
Q  28 gtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaat 127  Q
    ||||| |||||||||||||||||||||||||| ||||||||| ||   ||| ||| ||||||||||||||||||||||| |||| ||||||||||||| |    
T  27425787 gtggacgtgccaaagggatatcttgcagtatatgttggagagaaacaaaagcggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagact 27425886  T
Q  128 tattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 193  Q
    |||||| ||||   |||||| | || |||||||| ||||| |||||||| ||||| ||||||||||    
T  27425887 tattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgca 27425952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 193
Target Start/End: Complemental strand, 27570214 - 27570049
Alignment:
Q  28 gtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaat 127  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||  || | ||| |||||||||  |||||||||| |||||| | ||||||||||| |    
T  27570214 gtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagact 27570115  T
Q  128 tattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 193  Q
    |  ||| |||||| |||||| | ||||||||||| ||||| |||||||| ||||| ||||||||||    
T  27570114 tgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggcctcaccattccttgca 27570049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 27476661 - 27476857
Alignment:
Q  27 cgtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaa 126  Q
    |||||| || |||||||||||||| ||||| || ||||| ||| |||||||| |||||||||| ||  |||||||||||| |||| | ||||| ||||||    
T  27476661 cgtggacgttccaaagggatatctagcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaa 27476760  T
Q  127 ttattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 223  Q
     |  |||  |||   ||||||||||| | |||||| ||||||||||||||||| || |||||||||||||||||| ||||||| |||||||| ||||    
T  27476761 ctgctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttcttggatattacctctc 27476857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 27500503 - 27500319
Alignment:
Q  28 gtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaat 127  Q
    ||||| || ||||| |||||||| ||||| ||||| |||||| |||||||| | ||||||||||| ||||||||||| | ||||   ||||| |||||||    
T  27500503 gtggacgtaccaaaaggatatctagcagtgtacgtaggagagaaaatgaagcgatttgtgatccctatatcatacttaaaccaaagttcattccaagaat 27500404  T
Q  128 tattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttaga 212  Q
    |  |||  ||| | || ||||| ||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||    
T  27500403 tgctgagccaatctgaagaacagttcggatatgaccatccaatgggtggcatcactattccttgcagagaagaccttttcttaga 27500319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 231
Target Start/End: Original strand, 27466805 - 27466999
Alignment:
Q  37 ccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatc 136  Q
    |||||||||||||| ||||| ||||| ||| |||| |||||||| ||||||||||| |||||||| ||||  |||  || ||| |||||| |  |||  |    
T  27466805 ccaaagggatatctagcagtgtacgtaggaaaggagatgaagagatttgtgatccctatatcatatttgaagcaaaaattattccaagaactgctgagcc 27466904  T
Q  137 aagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcgtttgaat 231  Q
    ||   ||||||||||| | |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||| | ||||||    
T  27466905 aaagtgaggaacaatttgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagttttcttagacatcacttctagcttgaat 27466999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 27502980 - 27502771
Alignment:
Q  20 caaaaggcgtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatt 119  Q
    |||||||| ||||||||||||| ||||||||||| || || || |||||| | |||||| |||||||||| ||||| ||||| ||||  ||| | |||||    
T  27502980 caaaaggcttggatgtgccaaaaggatatcttgccgtttatgtaggagagaagatgaagcggtttgtgattccaatgtcatatttgaatcaaacttcatt 27502881  T
Q  120 tcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattact 219  Q
    |||||| ||  |||  ||||| | |||| |||| |||||||||||||||||||||||||| || ||||||||   ||||||  ||||| ||||||| |||    
T  27502880 tcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatgggtggtcttactattccttgtgaagaagattttttcgtagatatcact 27502781  T
Q  220 tctcgtttga 229  Q
    ||||| ||||    
T  27502780 tctcgcttga 27502771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 27414463 - 27414297
Alignment:
Q  34 gtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattga 133  Q
    |||||||| || ||||||||||| |||||||||||  ||||||   |||||||||| ||  |||||||||||| |||| | ||||||||||||||| | |    
T  27414463 gtgccaaaaggctatcttgcagtctacgttggagataaaatgagacggtttgtgattcctgtatcatacttgaaccaaccctcatttcaagaattactaa 27414364  T
Q  134 atcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaaga 200  Q
    ||||| | || ||| |||| |||||||| ||||||||||||||||| |||||||| ||||| |||||    
T  27414363 atcaatcagaagaagaatttggatatgatcatccaatgggtggtcttacaattccgtgcagtgaaga 27414297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 215
Target Start/End: Original strand, 27460489 - 27460640
Alignment:
Q  64 ggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgacc 163  Q
    |||||||| |||||||| ||||||||||| |||||||| ||||  |||  |||||| ||||||||  |||  |||   ||||||||||| | |||||| |    
T  27460489 ggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaacaatttgaatatgatc 27460588  T
Q  164 atccaatgggtggtctcacaattccttgcagagaagacgttttcttagatat 215  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| |||||    
T  27460589 atccaatgggtggtctcaccattccttgcagagaagacattttcttggatat 27460640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 27415599 - 27415768
Alignment:
Q  28 gtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaat 127  Q
    ||||||||||||||||||||||||||||| || |||||| |  |||   || | ||||||||||| ||||||||||||| |||| |||| |||||||| |    
T  27415599 gtggatgtgccaaagggatatcttgcagtgtatgttggaaaacaaa---agcgatttgtgatccccatatcatacttgaaccaaccatcgtttcaagact 27415695  T
Q  128 tattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaaga 200  Q
    | |||| |||||| |||||| | || |||||||| ||| | |||||||| ||||| |||||||||| ||||||    
T  27415696 tgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggcctcaccattccttgcacagaaga 27415768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 27563520 - 27563346
Alignment:
Q  19 acaaaaggcgtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcat 118  Q
    |||||||  ||||| ||||||||||| ||||||||||| |||||||||||  ||   |||||  ||||||||||  |||||||||||| |||| |||  |    
T  27563520 acaaaagttgtggacgtgccaaagggctatcttgcagtgtacgttggagataaacaaaagagaattgtgatccccgtatcatacttgaaccaaacattgt 27563421  T
Q  119 ttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 193  Q
    ||||||| ||  ||| ||||||||| ||| | || |||||||| |||||||||||||| ||||||||||||||||    
T  27563420 ttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggcctcacaattccttgca 27563346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 27412691 - 27412804
Alignment:
Q  80 ggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtct 179  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||||| ||||||| |||||| || ||| | || |||||||| |||||||||||||| ||    
T  27412691 ggtttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggcct 27412790  T
Q  180 cacaattccttgca 193  Q
    ||| ||||||||||    
T  27412791 caccattccttgca 27412804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 212
Target Start/End: Original strand, 27567282 - 27567414
Alignment:
Q  80 ggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtct 179  Q
    |||| ||||| ||| |||||||||||| |||| |||| |||||||||||| | |||||| | || ||| |||| || ||||| |||||||||||||||||    
T  27567282 ggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaatttggttatgatcatccaatgggtggtct 27567381  T
Q  180 cacaattccttgcagagaagacgttttcttaga 212  Q
    ||||||||||||||| ||||| | |||||||||    
T  27567382 cacaattccttgcagcgaagatgctttcttaga 27567414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 27411569 - 27411455
Alignment:
Q  80 ggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtct 179  Q
    |||| ||||| ||| |||||||||||| |||| |||| |||||||||||| | |||||||| || ||| |||| |||||||| ||||| |||||||||||    
T  27411569 ggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtct 27411470  T
Q  180 cacaattccttgcag 194  Q
    |||||||||||||||    
T  27411469 cacaattccttgcag 27411455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 27502207 - 27502113
Alignment:
Q  121 caagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatat 215  Q
    |||||||| ||||| ||||| ||||||||||| | |||||| ||||||||||||||||| || |||||||||||||||||| |||||||||||||    
T  27502207 caagaattgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttcttagatat 27502113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 27585663 - 27585835
Alignment:
Q  28 gtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaat 127  Q
    ||||| ||||||||||||||||| ||||| | |||||| ||  ||   ||||| |||||||||||  |||||||||||| |||| |||  |||||||| |    
T  27585663 gtggacgtgccaaagggatatctcgcagtgtgcgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatt 27585762  T
Q  128 tattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaaga 200  Q
    |  ||| ||||||||| ||| | || |||||||| ||||||||||| |||||||| |||||||||| ||||||    
T  27585763 tgatgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctcaccattccttgcacagaaga 27585835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 192
Target Start/End: Original strand, 27571607 - 27571762
Alignment:
Q  37 ccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatc 136  Q
    ||||| || ||||| ||||| || ||||||||   ||||| | |||| ||||| ||| ||||||| ||||||||  |||| |||||||||||| | ||||    
T  27571607 ccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatc 27571706  T
Q  137 aagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 192  Q
    || | || ||| |||| |||||||| ||||||||||||||||||||||||||||||    
T  27571707 aatcagaagaagaatttggatatgatcatccaatgggtggtctcacaattccttgc 27571762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 210
Target Start/End: Complemental strand, 27419227 - 27419054
Alignment:
Q  37 ccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatc 136  Q
    ||||| || ||||| ||||| || ||||||||   ||||| | |||| ||||| ||| ||||||| ||||||||  |||| |||||||||||| | ||||    
T  27419227 ccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattactaaatc 27419128  T
Q  137 aagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttctta 210  Q
    || | || ||| |||| |||||||| ||||||||||||||||| |||||||||||| | ||||| | |||||||    
T  27419127 aatcagaagaagaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttctta 27419054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 193
Target Start/End: Original strand, 27420383 - 27420548
Alignment:
Q  28 gtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaat 127  Q
    ||||| |||||||||||||||||||||||||| ||||||||| ||  || | ||| | | |||||  ||||||||||||||||| | ||||||||||  |    
T  27420383 gtggacgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggtatttaatccccgtatcatacttgagccaaccttcatttcaaggct 27420482  T
Q  128 tattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 193  Q
    |  ||| |||||  |||||| | || |||||||| ||||| |||||||| ||||| ||||||||||    
T  27420483 tgctgagtcaagttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgca 27420548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 27507986 - 27507777
Alignment:
Q  20 caaaaggcgtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatt 119  Q
    |||||||| ||||| ||||||||||||| ||||| || ||||| ||||   |||||||| ||||||| || ||||| ||||| ||||  ||| | ||| |    
T  27507986 caaaaggcttggatatgccaaagggataccttgcggtgtacgtaggagtaaaaatgaagcggtttgtaattccaatgtcatatttgaatcaaacttcact 27507887  T
Q  120 tcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattact 219  Q
    |||||| ||  | |  || || |  ||| |||| |||||||||||||||||||||||||| |||||||||||   ||||||  ||||||||||||| |||    
T  27507886 tcaagagttgctcagccaggctgtcgaagaatttggatatgaccatccaatgggtggtcttacaattccttgtgaagaagatcttttcttagatatcact 27507787  T
Q  220 tctcgtttga 229  Q
    ||||| ||||    
T  27507786 tctcgcttga 27507777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 193
Target Start/End: Complemental strand, 27486099 - 27485943
Alignment:
Q  37 ccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatc 136  Q
    |||||||| ||| ||||||| || ||||||||| ||  |||| |||||||  |||||||||||||||||| |||| |||  |||||||||||  |  |||    
T  27486099 ccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatc 27486000  T
Q  137 aagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 193  Q
    |||| || ||| |||| |||||||| ||||| |||||||| ||||| ||||||||||    
T  27485999 aagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgca 27485943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 193
Target Start/End: Original strand, 27506682 - 27506838
Alignment:
Q  37 ccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatc 136  Q
    |||||||| ||| |||||||||| || |||||| ||  || | ||||||||||||||||||||||||| | |||| |||  |||||||||||  |  |||    
T  27506682 ccaaagggctatgttgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatc 27506781  T
Q  137 aagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 193  Q
    |||| || ||| |||| |||||||| ||||| |||||||| ||||| ||||||||||    
T  27506782 aagcggaagaagaatttggatatgatcatcccatgggtggactcaccattccttgca 27506838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 192
Target Start/End: Complemental strand, 27479039 - 27478884
Alignment:
Q  37 ccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatc 136  Q
    |||||||| ||| ||||||| || ||||||||| ||  |||| |||||||  |||||||||||||||||| |||| |||  |||||||||||  |  |||    
T  27479039 ccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatc 27478940  T
Q  137 aagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 192  Q
    |||| || ||| |||| |||||||| ||||| |||||||| ||||| |||||||||    
T  27478939 aagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27478884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 27503964 - 27504062
Alignment:
Q  95 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 193  Q
    |||||||||||| |||| | ||||||||||| || |||| ||||||||||||| | || |||||||| |||||||||||||| ||||| ||||||||||    
T  27503964 tatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgca 27504062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 194
Target Start/End: Complemental strand, 27424670 - 27424513
Alignment:
Q  37 ccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatc 136  Q
    ||||| || ||||| ||||| || ||||||||  |||||| | |||||||||| ||| |||||||||||| |||| | ||||||||||||||  | ||||    
T  27424670 ccaaaaggctatctcgcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatc 27424571  T
Q  137 aagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcag 194  Q
    || | || ||| |||  |||||||| ||||||||||||||||| || ||||| |||||    
T  27424570 aatctgaagaagaatatggatatgatcatccaatgggtggtcttaccattccgtgcag 27424513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 210
Target Start/End: Complemental strand, 27556535 - 27556362
Alignment:
Q  37 ccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatc 136  Q
    ||||| || ||||| ||||| || ||||||||  |||||||| | |||||||| || || ||||  |||| |||| | ||||||||||||||| |  |||    
T  27556535 ccaaaaggctatctcgcagtttatgttggagaaaaaatgaagcgatttgtgattcccatttcattattgaaccaaccttcatttcaagaattactacatc 27556436  T
Q  137 aagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttctta 210  Q
    |||| || ||| |||| |||||||| ||| | |||||||||||||||||||| ||||| ||||| | |||||||    
T  27556435 aagcagaagaagaatttggatatgatcattctatgggtggtctcacaattccatgcagtgaagatgctttctta 27556362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 200
Target Start/End: Complemental strand, 27422091 - 27421924
Alignment:
Q  37 ccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatc 136  Q
    ||||| || ||||| ||||| || ||||||||   ||||||  |||| ||||| ||| |||||||||||| |||| ||| ||||||||||||| | ||||    
T  27422091 ccaaaaggctatctcgcagtctatgttggagatagaatgaaacggttcgtgattccagtatcatacttgaaccaaccattatttcaagaattactaaatc 27421992  T
Q  137 aagccgaggaacaatt----cggatatgaccatccaatgggtggtctcacaattccttgcagagaaga 200  Q
    |||| || ||| ||||     ||||| || ||||||| |||||||||||||||||||||||| |||||    
T  27421991 aagcagaagaagaatttggatggatacgatcatccaacgggtggtctcacaattccttgcagtgaaga 27421924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 210
Target Start/End: Complemental strand, 27559396 - 27559223
Alignment:
Q  37 ccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatc 136  Q
    ||||| || ||||| ||||| || ||||||||  |||||||||| ||| |||| || || ||||  ||||  ||||| ||||||||| | ||||| |  |    
T  27559396 ccaaaaggctatctcgcagtttatgttggagacaaaatgaagagatttctgattcctatttcattattgaatcaatcttcatttcaatagttattaagcc 27559297  T
Q  137 aagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttctta 210  Q
    || | || ||| | || |||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||    
T  27559296 aatcagaagaagagtttggatatgatcatccaatgggtggtctcacaattccttgcagtgaagatgctttctta 27559223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 27490020 - 27490096
Alignment:
Q  113 catcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattcct 189  Q
    ||||||||||||| || |||||||||||||||||| | || |||||||| |||||||||||||| ||||| ||||||    
T  27490020 catcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattcct 27490096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 27566116 - 27565953
Alignment:
Q  28 gtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaat 127  Q
    ||||| ||||||||||||||||||||||| || ||||||||| ||   ||| | ||||||||||| ||||||||| ||| |||| |||  |||||||| |    
T  27566116 gtggacgtgccaaagggatatcttgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccattgtttcaagact 27566017  T
Q  128 tattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttg 191  Q
    |  |||  ||||  |||||| |    |||||||| |||||||||||||| ||||| ||||||||    
T  27566016 tgctgatacaagttgaggaagagcatggatatgatcatccaatgggtggcctcaccattccttg 27565953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 193
Target Start/End: Complemental strand, 27468425 - 27468327
Alignment:
Q  95 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 193  Q
    |||||||||| | |||| | ||||||||||| || |||| |||| |||||||| |||| |||||||| ||||| |||||||| ||||| ||||||||||    
T  27468425 tatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgca 27468327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 27524566 - 27524664
Alignment:
Q  95 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 193  Q
    ||||||| |||| |||| | ||||||||||| || ||||||||||| |||||| | || |||||||| |||||||||||||| ||||| ||||| ||||    
T  27524566 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccgtgca 27524664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 27475677 - 27475580
Alignment:
Q  95 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgc 192  Q
    ||||||||||||  ||| | ||||||||||| || |||| ||||||||||||| | || |||||||| ||||| |||||||| ||||| |||||||||    
T  27475677 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgc 27475580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 200
Target Start/End: Original strand, 27514933 - 27515038
Alignment:
Q  95 tatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcag 194  Q
    ||||||||||||  ||| | ||||||||||| || |||| |||| |||||||| |||| |||||||| ||||| |||||||| ||||| |||||||| |     
T  27514933 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgtac 27515032  T
Q  195 agaaga 200  Q
    ||||||    
T  27515033 agaaga 27515038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 207
Target Start/End: Original strand, 27423204 - 27423376
Alignment:
Q  35 tgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaa 134  Q
    |||||||| |||||||||| ||||| |||||| || ||  ||   ||  ||||||||  ||||||||||||| |||| | |||||||||||||| ||||     
T  27423204 tgccaaagagatatcttgctgtatatgttggatagaaacagacacggcatgtgatccgcatatcatacttgaaccaaccttcatttcaagaattgttgag 27423303  T
Q  135 tcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttc 207  Q
    ||||||||||||| | || || ||  | ||||| |||||||| |||||  |||||||||  ||||| ||||||    
T  27423304 tcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttc 27423376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 27495646 - 27495683
Alignment:
Q  163 catccaatgggtggtctcacaattccttgcagagaaga 200  Q
    |||||||||||||||||||| |||||||||||||||||    
T  27495646 catccaatgggtggtctcaccattccttgcagagaaga 27495683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 200
Target Start/End: Original strand, 27600663 - 27600700
Alignment:
Q  163 catccaatgggtggtctcacaattccttgcagagaaga 200  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  27600663 catccaatgggtggtctcacaattccttgcaaagaaga 27600700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 193
Target Start/End: Complemental strand, 27497478 - 27497322
Alignment:
Q  37 ccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatc 136  Q
    |||||||| ||| ||||||| || ||||||||  ||   ||| ||||||||||||| || |||||||| | |||| |||  |||||| | || |||| ||    
T  27497478 ccaaagggctatgttgcagtgtatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgttgagtc 27497379  T
Q  137 aagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 193  Q
    |||| |||||| | || |||||||| ||||| |  ||||| ||||| ||||||||||    
T  27497378 aagctgaggaagagtttggatatgatcatcccacaggtggcctcaccattccttgca 27497322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 27527145 - 27527281
Alignment:
Q  37 ccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatc 136  Q
    |||||||| |||||||| || || ||||||||  ||  |||  |||||||||||||||||||| |||| | |||| |||| |||| ||| ||  ||| ||    
T  27527145 ccaaagggctatcttgcggtgtatgttggagataaacagaaacggtttgtgatcccaatatcacacttaaaccaaccatcgtttctagagttgctgagtc 27527244  T
Q  137 aagccgaggaacaattcggatatgaccatccaatggg 173  Q
    |||| |||||| | || |||||||| ||||| |||||    
T  27527245 aagctgaggaagagtttggatatgatcatcccatggg 27527281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 188
Target Start/End: Original strand, 27508896 - 27508987
Alignment:
Q  97 tcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattcc 188  Q
    ||||| |||| |||| | ||||||||||| || |||||||| || |||||| | || |||||||| ||||||| |||||| ||||| |||||    
T  27508896 tcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggcctcaccattcc 27508987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 27446250 - 27446306
Alignment:
Q  156 atatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttaga 212  Q
    |||||| |||| ||||| ||||||| | ||||||||||| ||||| |||||||||||    
T  27446250 atatgatcatcgaatggatggtctctcgattccttgcagtgaagatgttttcttaga 27446306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 32 - 223
Target Start/End: Complemental strand, 38040242 - 38040051
Alignment:
Q  32 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattatt 131  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||| | ||||| ||||| |  |||||||||| |||| | ||||||||| |  | ||    
T  38040242 atgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacctgtt 38040143  T
Q  132 gaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 223  Q
    || ||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||  ||||||||||||    
T  38040142 gagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctc 38040051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 223
Target Start/End: Complemental strand, 38028927 - 38028736
Alignment:
Q  32 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattatt 131  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||| | ||||| ||||| |  |||||||||| |||| | ||||||||| |  | ||    
T  38028927 atgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacctgtt 38028828  T
Q  132 gaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 223  Q
    || ||||||||||||| |||| |||||||||||||||||||| || |||||||||||||||| |||||||||||||||  ||||||||||||    
T  38028827 gagtcaagccgaggaagaatttggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctc 38028736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 223
Target Start/End: Complemental strand, 38036954 - 38036763
Alignment:
Q  32 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattatt 131  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||  |||||||  |||| ||  ||||||||| |||| | ||||||||| | || ||    
T  38036954 atgtgccaaagggctatcttgcagtgtacgttggagagcaaatgaaacggtttgttgtccccatgccatacttgaaccaagcttcatttcaaaatttgtt 38036855  T
Q  132 gaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 223  Q
    || ||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||| |||| ||||||||||  ||||||||||||    
T  38036854 gagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaatacgttttcttgcatattacttctc 38036763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 224
Target Start/End: Complemental strand, 50904953 - 50904761
Alignment:
Q  32 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattatt 131  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||  || || ||||||| |||| | ||||||||||| || ||    
T  50904953 atgtgccaaagggatatcttgcagtgtacgttggagaagaaatgaagcggtttgtgatccatatgtcctacttgaaccaaacttcatttcaagacttgtt 50904854  T
Q  132 gaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcg 224  Q
    || || ||| |||||  ||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||| ||  |||| ||||||||    
T  50904853 gagtcgagcagaggatgaattcggatatgatcatccaatgggtggcctcaccattccttgcagagaagaggtttttttgcatatcacttctcg 50904761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 224
Target Start/End: Complemental strand, 38025036 - 38024844
Alignment:
Q  32 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattatt 131  Q
    |||| |||||||| |||||||||||||| ||||||||| |||||||| ||||||| ||||| || |||||||||| |||| | || |||||| | |||||    
T  38025036 atgtaccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttatt 38024937  T
Q  132 gaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcg 224  Q
    || |||||| |||||| |||| |||||||| || ||||||||||| ||||| |||||||||| ||||||| ||||| | || |||||||||||    
T  38024936 gagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaagacattttcatggaaattacttctcg 38024844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 224
Target Start/End: Complemental strand, 38031488 - 38031296
Alignment:
Q  32 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattatt 131  Q
    |||| |||||||| |||||||||||||| ||||||||| |||||||| ||||||| ||||| || |||||||||| |||| | || |||||| | |||||    
T  38031488 atgtaccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttatt 38031389  T
Q  132 gaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcg 224  Q
    || |||||| |||||| |||| |||||||| || ||||||||||| ||||| |||||||||| ||||||| ||||| | || |||||||||||    
T  38031388 gagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaagacattttcatggaaattacttctcg 38031296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 224
Target Start/End: Original strand, 55084765 - 55084957
Alignment:
Q  32 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattatt 131  Q
    |||||||||| || | ||||||||| || ||||||||| |||||||| ||||||||||||| || || ||||||| |||| ||||||||||||| || ||    
T  55084765 atgtgccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgtt 55084864  T
Q  132 gaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcg 224  Q
    || ||  || |||||| |||| ||||| || |||||||||||||| |||||||||||||||| |||||| ||||||||  |||||||||||||    
T  55084865 gagtcgggcggaggaagaatttggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgttttctttcatattacttctcg 55084957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 32 - 224
Target Start/End: Original strand, 50909939 - 50910131
Alignment:
Q  32 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattatt 131  Q
    ||||||||||||| ||||||||||| || ||||||||| |||||  | ||||||| ||||| || |||||||||| |||| | ||||||||| | || ||    
T  50909939 atgtgccaaagggttatcttgcagtgtatgttggagagcaaatgctgcggtttgttatccccatgtcatacttgaaccaagcttcatttcaaaacttgtt 50910038  T
Q  132 gaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcg 224  Q
    ||||||||  |||||| |||| |||||||| |||||||||||||| |||||||||||||||| |||||| || |||||  | |||||||||||    
T  50910039 gaatcaagtggaggaagaatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatgtcttcttgcaaattacttctcg 50910131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 224
Target Start/End: Complemental strand, 38033940 - 38033744
Alignment:
Q  32 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattatt 131  Q
    ||||||||||||| ||||||||||| ||| |||||||| |||||||| ||||||| ||||| |  |||||||||| |||| | ||||||||| | || ||    
T  38033940 atgtgccaaagggctatcttgcagtgtacattggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgtt 38033841  T
Q  132 gaatcaagccgaggaacaattcggatatgaccatccaat----gggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcg 224  Q
    || ||||||||||||| |||| |||||||||||||||||    ||| ||  |||||||||| |||| |||||| ||||||||  |||||||||||||    
T  38033840 gagtcaagccgaggaagaatttggatatgaccatccaattaatgggcggcatcacaattccctgcacagaagatgttttcttgcatattacttctcg 38033744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 193
Target Start/End: Original strand, 38043882 - 38044043
Alignment:
Q  32 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattatt 131  Q
    ||||||||||| | ||||||||||| ||| ||||||||||||||||| ||||||||||||| || ||||||||||  ||| | || |||||||| ||  |    
T  38043882 atgtgccaaagagctatcttgcagtgtactttggagaggaaatgaagcggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgct 38043981  T
Q  132 gaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 193  Q
    || |||||| |||||| |||| |||||||| ||||||||||| || ||||||||||||||||    
T  38043982 gagtcaagcagaggaagaatttggatatgatcatccaatgggcggcctcacaattccttgca 38044043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 209
Target Start/End: Complemental strand, 48840873 - 48840696
Alignment:
Q  31 gatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattat 130  Q
    |||||||||||||||||||||||| | ||||| |||||||| |||||| | ||||| ||||| ||  ||||||||| |||| | ||||||||||| || |    
T  48840873 gatgtgccaaagggatatcttgcattgtacgtcggagaggagatgaagcgatttgtaatccccatgccatacttgaaccaagcctcatttcaagacttgt 48840774  T
Q  131 tgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttctt 209  Q
    ||| | |||  ||| || |||| |||||||| |||||||||||||| |||||||||||||||| |||||| ||||||||    
T  48840773 tgagt-aagtggagaaagaatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatgttttctt 48840696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 209
Target Start/End: Complemental strand, 50912030 - 50911853
Alignment:
Q  32 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattatt 131  Q
    ||||||||||||| |||||||| ||||| ||||||||  | |||||  ||||||||||||| |  |||||||||| |||| | ||||||||| | || ||    
T  50912030 atgtgccaaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgtt 50911931  T
Q  132 gaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttctt 209  Q
    || |||||| |||||| |||| |||||||| || ||||||||||| || ||||||||||||| |||||  ||||||||    
T  50911930 gagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacagaaggtgttttctt 50911853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 50913471 - 50913549
Alignment:
Q  28 gtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttga 106  Q
    ||||| || ||||| || ||||||||||| || ||||||||| |||||||||||||  |||| |||||||||| |||||    
T  50913471 gtggaagtcccaaaaggctatcttgcagtgtatgttggagagaaaatgaagaggttcttgattccaatatcattcttga 50913549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 38035165 - 38035212
Alignment:
Q  163 catccaatgggtggtctcacaattccttgcagagaagacgttttctta 210  Q
    |||||||||||||||||||||||||| ||||  |||||||| ||||||    
T  38035165 catccaatgggtggtctcacaattccctgcaaggaagacgtattctta 38035212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 32 - 223
Target Start/End: Complemental strand, 21604915 - 21604724
Alignment:
Q  32 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattatt 131  Q
    ||||||||||||| ||||||||||| || || |||||| |||||||| | ||||| ||||| |  |||||||||| |||| | ||||||||| |  | ||    
T  21604915 atgtgccaaagggctatcttgcagtgtaagtaggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacatgtt 21604816  T
Q  132 gaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 223  Q
    || ||||| ||||||| |||| |||||||||||||||||||| || |||||||||||||||| |||||||||||||||  ||||||||||||    
T  21604815 gagtcaagacgaggaagaattaggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctc 21604724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 224
Target Start/End: Complemental strand, 21607457 - 21607265
Alignment:
Q  32 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattatt 131  Q
    |||| ||||||||||||||||| ||||| ||||||||| |||||||| ||||||| ||||| || |||||||||| || | | || |||||| | |||||    
T  21607457 atgtaccaaagggatatcttgcggtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccgagcttcctttcaaaacttatt 21607358  T
Q  132 gaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctcg 224  Q
    || |||||| |||||| |||| |||||||| || ||||||||||| |||||  ||||||||| ||||||  ||||| | || |||||||||||    
T  21607357 gagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctcacggttccttgcacagaagatattttcatggaaattacttctcg 21607265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 21634608 - 21634699
Alignment:
Q  118 tttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttctt 209  Q
    |||||||| ||  ||| |||||| |||||| |||| |||||||| |||| |||||| ||  |||||||||||||||  ||||| ||||||||    
T  21634608 tttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgcaccgaagatgttttctt 21634699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 206
Target Start/End: Original strand, 3073548 - 3073722
Alignment:
Q  32 atgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattatt 131  Q
    |||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |  |||||||||| |||| | ||||||||| | ||  |    
T  3073548 atgtgccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgct 3073647  T
Q  132 gaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgtttt 206  Q
    || ||  || |||||| |||||||||| || |||||||||||||| |||||||||||||||| |||||| |||||    
T  3073648 gagtcgggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgtttt 3073722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 1754414 - 1754206
Alignment:
Q  20 caaaaggcgtggatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatt 119  Q
    ||||||||||||| | |||||| |||||||| || ||||| |||||||| ||||||||| |||||||||||||  |||||||||||| |||||| |||||    
T  1754414 caaaaggcgtggacgagccaaaaggatatctagctgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatt 1754315  T
Q  120 tcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattact 219  Q
    |||| ||||  | ||  || | |||||||| || | |||||| ||||| |||||||||||||| |||||||| |||||| || ||||||||||||| |||    
T  1754314 tcaaaaattgctaaacaaatctgaggaacagtttgaatatgatcatccgatgggtggtctcactattccttgtagagaa-accttttcttagatatcact 1754216  T
Q  220 tctcgtttga 229  Q
    ||||| ||||    
T  1754215 tctcgcttga 1754206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 1759253 - 1759422
Alignment:
Q  58 tacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattga----atcaagccgaggaacaattc 153  Q
    ||||| |||||| |||||||| |||||||||| ||  ||||||| || | |||| ||||||| |||||||| ||||    | ||||| |||||||||||     
T  1759253 tacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaagcaagctgaggaacaattt 1759352  T
Q  154 ggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 223  Q
    | |||  |||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||    
T  1759353 gaatacaaccatccaatgggtggtctcaccattctttgcagagaagaagttttcttagatatcacttctc 1759422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 193
Target Start/End: Complemental strand, 1756919 - 1756757
Alignment:
Q  31 gatgtgccaaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattat 130  Q
    ||||| |||||||| |||||||||||  | ||||||||| ||  |||| ||||||||||||||||||||||||||| |||| |||| |||||| | || |    
T  1756919 gatgtaccaaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgt 1756820  T
Q  131 tgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgca 193  Q
    ||| |||||| || ||| |||| |||||||| || || |||||||| ||||| ||||||||||    
T  1756819 tgagtcaagctgaagaagaatttggatatgatcaccccatgggtggcctcaccattccttgca 1756757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 1754719 - 1754835
Alignment:
Q  84 tgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtctcaca 183  Q
    |||||||||||||||||||||||  ||| |||| ||||||   || |||| |||||| | |||| | || |||||||| |||||||||||||| |||||     
T  1754719 tgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgcggaagagtttggatatgatcatccaatgggtggcctcacc 1754818  T
Q  184 attccttgcagagaaga 200  Q
    |||| ||||| ||||||    
T  1754819 attctttgcacagaaga 1754835  T

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