View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20316_low_45 (Length: 221)

Name: NF20316_low_45
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20316_low_45
NF20316_low_45
[»] chr7 (13 HSPs)
chr7 (18-205)||(36464394-36464581)
chr7 (21-205)||(8414665-8414848)
chr7 (18-203)||(8733668-8733850)
chr7 (18-203)||(3932543-3932728)
chr7 (18-203)||(3934782-3934967)
chr7 (18-205)||(3052026-3052217)
chr7 (18-162)||(19788938-19789082)
chr7 (18-162)||(19786632-19786776)
chr7 (29-203)||(42678752-42678934)
chr7 (117-203)||(16535260-16535346)
chr7 (117-203)||(16630316-16630402)
chr7 (117-203)||(16497078-16497164)
chr7 (29-79)||(19094042-19094092)
[»] chr8 (6 HSPs)
chr8 (18-205)||(21268301-21268487)
chr8 (18-202)||(36379638-36379822)
chr8 (18-202)||(36377353-36377537)
chr8 (18-203)||(4876820-4877005)
chr8 (18-203)||(4879148-4879333)
chr8 (18-203)||(24519325-24519510)
[»] chr1 (8 HSPs)
chr1 (18-205)||(29833246-29833433)
chr1 (18-202)||(734749-734933)
chr1 (18-205)||(2403998-2404185)
chr1 (109-206)||(2416660-2416758)
chr1 (29-203)||(8933731-8933913)
chr1 (121-192)||(419213-419284)
chr1 (18-51)||(29833852-29833885)
chr1 (49-108)||(18353733-18353792)
[»] chr4 (8 HSPs)
chr4 (18-203)||(45166899-45167084)
chr4 (18-203)||(45162007-45162192)
chr4 (18-203)||(42468610-42468795)
chr4 (18-203)||(42470939-42471124)
chr4 (18-171)||(50855932-50856085)
chr4 (18-104)||(19429248-19429334)
chr4 (18-159)||(8739264-8739406)
chr4 (29-95)||(43179575-43179641)
[»] chr5 (10 HSPs)
chr5 (18-202)||(23164411-23164595)
chr5 (18-202)||(22600741-22600925)
chr5 (18-202)||(37207701-37207885)
chr5 (18-202)||(11850078-11850262)
chr5 (18-201)||(11852336-11852519)
chr5 (29-203)||(1779399-1779581)
chr5 (18-98)||(37215396-37215476)
chr5 (41-203)||(1779645-1779815)
chr5 (136-203)||(37207640-37207707)
chr5 (29-109)||(15469006-15469086)
[»] chr2 (5 HSPs)
chr2 (18-202)||(31486712-31486896)
chr2 (18-202)||(31488996-31489180)
chr2 (29-203)||(34576782-34576969)
chr2 (18-201)||(29801805-29801993)
chr2 (29-187)||(23859825-23859996)
[»] chr3 (3 HSPs)
chr3 (18-203)||(18966282-18966480)
chr3 (31-106)||(1701104-1701179)
chr3 (32-88)||(8535522-8535578)
[»] scaffold0050 (2 HSPs)
scaffold0050 (18-110)||(29261-29352)
scaffold0050 (18-110)||(31574-31667)
[»] scaffold0599 (1 HSPs)
scaffold0599 (18-68)||(1579-1629)
[»] chr6 (1 HSPs)
chr6 (47-171)||(21199149-21199281)
[»] scaffold0312 (1 HSPs)
scaffold0312 (121-192)||(11287-11358)
[»] scaffold0008 (1 HSPs)
scaffold0008 (155-203)||(73105-73153)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 36464394 - 36464581
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464394 aatatctagaaacaaagaaaagtctggagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 36464493  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctct 205  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36464494 gtgtctagtagcttccttattattccctagtattctagagacttctatattattatttagtgttctagagacttccacattattctct 36464581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 8414665 - 8414848
Alignment:
Q  21 atctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtg 120  Q
    ||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8414665 atctagaaacaaagaaaagtctagagatatggatattttagtatataaaactagaag-atctagaaaagtcaagacttccctagtgcttatttagtagtg 8414763  T
Q  121 tctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctct 205  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  8414764 tctagtagtttccttattattccctagtattctagagacttctatattattctttagtgttctagatacttccacattattctct 8414848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 8733668 - 8733850
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||   ||||||||||||||||||    
T  8733668 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagac---cctagtgcttatttagta 8733764  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||    
T  8733765 gtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtgttctagagacttccatattattct 8733850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 3932728 - 3932543
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  3932728 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagta 3932629  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    || ||||||||| ||||||||||||||||||||||||||| |||| || ||||| |||||| ||||||||||||||| ||||||||    
T  3932628 gtatctagtagcttccttattattccctagtattctagagtcttccatattattctttagtcttctagagacttccatattattct 3932543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 3934967 - 3934782
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  3934967 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagta 3934868  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    || ||||||||| ||||||||||||||||||||||||||| |||| || ||||| |||||| ||||||||||||||| ||||||||    
T  3934867 gtatctagtagcttccttattattccctagtattctagagtcttccatattattctttagtcttctagagacttccatattattct 3934782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 3052217 - 3052026
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  3052217 aatatctagaaacaaagaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagttaagacttccctaatgcttatttagta 3052118  T
Q  118 gtgtctagtagcatccttattattcc----ctagtattctagagacttctattttattatttagtgttctagagacttccacattattctct 205  Q
    |||||||||||| |||||||||||      |||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||    
T  3052117 gtgtctagtagcttccttattatttattatctagtattctagagacttctatattattctttagtgttatagagacttcgacattattctct 3052026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 19789082 - 19788938
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  19789082 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagta 19788983  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttc 162  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  19788982 gtgtctagtagcttccttattattccctagtattctagagacttc 19788938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 19786776 - 19786632
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  19786776 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagta 19786677  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttc 162  Q
    |||||||||||| |||||||||||||||| |||||||||||||||    
T  19786676 gtgtctagtagcttccttattattccctaatattctagagacttc 19786632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 42678752 - 42678934
Alignment:
Q  29 acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctt------atttagtag--tg 120  Q
    ||||||||| | ||||| | |||||||||||||  ||||  ||||||||||||||||||  | |||| || ||||||||||      |||||||||  ||    
T  42678752 acaaagaaaggcctagaaacatggatactctaggtcatatgactagaaggatctagaaacattaagattttcctagtgctttattttatttagtagagtg 42678851  T
Q  121 tctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    ||||||||| ||||||||||||| ||||||| |||||||||| || ||||| |||||| ||||||| ||||||| ||||||||    
T  42678852 tctagtagcttccttattattccatagtattttagagacttccatattattctttagttttctagaaacttccatattattct 42678934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 16535260 - 16535346
Alignment:
Q  117 agtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    ||||||||||||| || |||||||||| |||||||||||||||||| |  ||||| |||| | |||||||| |||||| ||||||||    
T  16535260 agtgtctagtagcttctttattattccatagtattctagagacttccacattattctttattattctagaggcttccatattattct 16535346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 16630402 - 16630316
Alignment:
Q  117 agtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    ||||||||||||| || |||||||||| |||||||||||||||||| |  ||||| |||| | |||||||| |||||| ||||||||    
T  16630402 agtgtctagtagcttctttattattccatagtattctagagacttccacattattctttattattctagaggcttccatattattct 16630316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 16497078 - 16497164
Alignment:
Q  117 agtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    ||||||||||||| ||||||||||||| |||||||||||| ||||| |  ||||| |||| | |||||||| | |||| ||||||||    
T  16497078 agtgtctagtagcttccttattattccatagtattctagaaacttccacattattctttattattctagaggcatccatattattct 16497164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 19094042 - 19094092
Alignment:
Q  29 acaaagaaaagtctagagatatggatactctagtacataaaactagaagga 79  Q
    ||||||||||||||||||| ||||||||||||||  ||||  |||||||||    
T  19094042 acaaagaaaagtctagagacatggatactctagtttataagtctagaagga 19094092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 21268301 - 21268487
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  21268301 aatatctagaaacaaagaaaagtctagagatatggatactttagtacataaaactagaaggatctagaaaagtcaagacttccctagtt-ttatttagta 21268399  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctct 205  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  21268400 gtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtgttctagagacttccacattattctct 21268487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 36379638 - 36379822
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  36379638 aatatctggaaacaaagaaaagtccagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagta 36379737  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattc 202  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  36379738 gtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttccacattattc 36379822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 36377353 - 36377537
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||  ||||||||||||||  ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  36377353 aatatctgaaaacaaagaaaagttcagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagta 36377452  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattc 202  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  36377453 gtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttccacattattc 36377537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 4877005 - 4876820
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  4877005 aatatctagaaacaaagaaaagtctagagatatggatactatagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagta 4876906  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    || ||||||||| |||||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  4876905 gtttctagtagcttccttattattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 4876820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 4879333 - 4879148
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  4879333 aatatctagaaacaaagaaaagtctagagatatggatactatagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagta 4879234  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    || ||||||||| |||||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  4879233 gtttctagtagcttccttattattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 4879148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 24519325 - 24519510
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  24519325 aatatctagaaacaaagaaaagtctagagatatggatacttttgtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagta 24519424  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    || ||| ||||| |||||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  24519425 gtatctggtagcttccttattattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 24519510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 29833246 - 29833433
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  29833246 aatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagta 29833345  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctct 205  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  29833346 gtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtgttctagagacttccacattattctct 29833433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 734749 - 734933
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  734749 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagttaagacttccctagtgcttatttagta 734848  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattc 202  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||||||||||    
T  734849 gtgtctagtagcttccttgttattccctagtattctagagacttctatattattctttagtcttctaaagacttccacattattc 734933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 2403998 - 2404185
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  2403998 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagta 2404097  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctct 205  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||||||||||||    
T  2404098 gtatctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagatttccacattattctct 2404185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 2416660 - 2416758
Alignment:
Q  109 tatttagtagtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttct-agagacttccacattattctctg 206  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||| | |||| |||| |||||||||||||||||||||||    
T  2416660 tatttagtagtatctagtagcttccttattattccctagtattctagagagttctatattattctgtagtcttctgagagacttccacattattctctg 2416758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 8933731 - 8933913
Alignment:
Q  29 acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctt------atttagtag--tg 120  Q
    ||||||||| | ||||| | |||||||||||||| ||||  ||||||||||||||||||  | |||| || ||||||||||      |||||||||  ||    
T  8933731 acaaagaaaggcctagaaacatggatactctagttcatatgactagaaggatctagaaacattaagattttcctagtgctttattttatttagtagagtg 8933830  T
Q  121 tctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    |||| |||| ||||||||||||| ||||||| |||||||||| || || || |||||| || |||| | ||||| ||||||||    
T  8933831 tctaatagcttccttattattccatagtattttagagacttccatatttttctttagttttttagaaatttccatattattct 8933913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 419213 - 419284
Alignment:
Q  121 tctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttc 192  Q
    ||||||||| ||||||||||||  ||  ||| |||||||||| || ||||| ||||||||||||||||||||    
T  419213 tctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 419284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 29833885 - 29833852
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatg 51  Q
    ||||||||||||||||||||||||||||||||||    
T  29833885 aatatctagaaacaaagaaaagtctagagatatg 29833852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 18353792 - 18353733
Alignment:
Q  49 atggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgct 108  Q
    |||||||||||||| ||||  ||||||||||||||||||||  |||| || |||||||||    
T  18353792 atggatactctagttcatatgactagaaggatctagaaaagataagattttcctagtgct 18353733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 45167084 - 45166899
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  45167084 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagtaaagacttccctagtgcttatttagta 45166985  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||| ||||| |||||| ||||||||||||||| ||||||||    
T  45166984 gtgtctagtagcttccttattattccctagtattctaaagacttctatattattctttagtcttctagagacttccatattattct 45166899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 45162192 - 45162007
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  45162192 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagtaaagacttccctagtgcttatttagta 45162093  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    |||||||||||| | |||||||||||||||||||||| |||||||||| ||||| |||||| ||||||||||||||| ||||||||    
T  45162092 gtgtctagtagctttcttattattccctagtattctaaagacttctatattattctttagtcttctagagacttccatattattct 45162007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 42468610 - 42468795
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  42468610 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagta 42468709  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    || ||||||||| |||||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  42468710 gtatctagtagcttccttattattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 42468795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 42470939 - 42471124
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  42470939 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagta 42471038  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    || ||||||||| |||||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  42471039 gtatctagtagcttccttattattcccaagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 42471124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 50855932 - 50856085
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  50855932 aatatctagaaacaaagaaaagtctagagatatggatactctggtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagta 50856031  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttatt 171  Q
    |||||||||||| ||||||||||||| |||||||||||||||||| || |||||    
T  50856032 gtgtctagtagcttccttattattccatagtattctagagacttccatattatt 50856085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 19429248 - 19429334
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctag 104  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19429248 aatatctataaacaaagaaaagtctagagatatgaatactctagtacataaaactagaaggatctagaaaagtcaagacttccctag 19429334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 8739406 - 8739264
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctta--tttag 115  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| ||||  ||||||||||||||||||  | |||| ||||||||||| ||  |||||    
T  8739406 aatatctagaaacaaagaaaaatctagagatatggatgctctagttcatatgactagaaggatctagaaacattaagatttccctagtgcataattttag 8739307  T
Q  116 tagtgtctagtagcatccttattattccctagtattctagagac 159  Q
    | |||| ||||||| ||||||||||||  |||||||||||||||    
T  8739306 t-gtgtatagtagcttccttattattcattagtattctagagac 8739264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 43179641 - 43179575
Alignment:
Q  29 acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaaga 95  Q
    |||||||||||| |||||| |||||||||||||| ||||  |||||||||||| | |||||| ||||    
T  43179641 acaaagaaaagtatagagacatggatactctagttcatatgactagaaggatccaaaaaagttaaga 43179575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 23164411 - 23164595
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||| ||||||||||    
T  23164411 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgtttatttagta 23164510  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattc 202  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  23164511 gtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttccacattattc 23164595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 22600925 - 22600741
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  22600925 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagta 22600826  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattc 202  Q
    ||||| |||||| | ||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  22600825 gtgtcaagtagctttcttattattccatagtattctagagacttctatattattatttagtcttctagagacttccacattattc 22600741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 37207885 - 37207701
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  37207885 aatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagta 37207786  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattc 202  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||    
T  37207785 gtgtctagtagcttccttattattccctagtattctacagacttctatattattctttagtcttctagagacttccacattattc 37207701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 11850078 - 11850262
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||| | ||||||||||||||||||||||||||    
T  11850078 aatatctagaaacaaagaaaagtctagagatatggatactcttgtacataagcctagaaggatctagaaaatttaagacttccctagtgcttatttagta 11850177  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattc 202  Q
    |||||||||||| | ||||||||||||||||||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  11850178 gtgtctagtagctttcttattattccctagtattttagagacttctatattattctttagtcttctagagacttccacattattc 11850262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 11852336 - 11852519
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||  |||||||||| | ||||||||||||||||||||||||    
T  11852336 aatatctagaaacaaataaaagtctagagatatggatactctagtacataagcctagaaggtcctagaaaagttatgacttccctagtgcttatttagta 11852435  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattatt 201  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||    
T  11852436 gtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttcctcattatt 11852519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 1779399 - 1779581
Alignment:
Q  29 acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctt------atttagt--agtg 120  Q
    ||||||||| | ||||| | |||||||||||||| ||||  ||||||||||||||||||  | |||| ||  |||||||||      |||||||  ||||    
T  1779399 acaaagaaaggcctagaaacatggatactctagttcatatgactagaaggatctagaaacattaagatttttctagtgctttattttatttagtggagtg 1779498  T
Q  121 tctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||||| ||||| |||||| ||||||| ||||||| ||||||||    
T  1779499 tctagtagcttccttattattccatagtattttagagacttctatattattctttagttttctagaaacttccatattattct 1779581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 37215476 - 37215396
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagactt 98  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||| ||||  |||||||||||||||||||| |||||||    
T  37215476 aatatctagaaacaaagaaaagtttagagacatggatactctagtatataagcctagaaggatctagaaaagttaagactt 37215396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 203
Target Start/End: Original strand, 1779645 - 1779815
Alignment:
Q  41 ctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctt-attt-----agtag--tgtctagtagcatc 132  Q
    ||||||||| ||||| |||||| ||||  ||||||||||||||||||  | |||| |||||||| |||| ||||     |||||  ||||||||||| ||    
T  1779645 ctagagatagggatattctagttcatatgactagaaggatctagaaacattaagatttccctagcgctttattttatccagtagaatgtctagtagcttc 1779744  T
Q  133 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
       |||||||  |||||||||||||||||| || ||||| ||||||||| | |||||||||||||| ||||    
T  1779745 gacattattctttagtattctagagacttccatattattctttagtgttatggagacttccacatttttct 1779815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 37207707 - 37207640
Alignment:
Q  136 attattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    |||||||||||||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  37207707 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattct 37207640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 15469086 - 15469006
Alignment:
Q  29 acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctt 109  Q
    |||| ||||||| ||||||||| ||||| ||| | ||||  |||||| |||||||||||||| || | || ||||||||||    
T  15469086 acaaggaaaagtttagagatatagatacactaattcatatgactagatggatctagaaaagttaatattttcctagtgctt 15469006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 31486896 - 31486712
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  31486896 aatatctggaaacaaagaaaagtccagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagta 31486797  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattc 202  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||| ||||||||||||||    
T  31486796 gtgtctagtagcttccttattattccctagtattctagagacttctatattattctctagtcttctagaggcttccacattattc 31486712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 31489180 - 31488996
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagta 117  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||  ||||||||||||||||||||||||||    
T  31489180 aatatctggaaacaaagaaaagtccagagatatggatactctagtacataagcttagaaggatctagaaaagctaagacttccctagtgcttatttagta 31489081  T
Q  118 gtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattc 202  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| || ||||||||||||||||||||    
T  31489080 gtgtctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttttagagacttccacattattc 31488996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 34576782 - 34576969
Alignment:
Q  29 acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgc-----------ttatttagt- 116  Q
    ||||||||||||||||||| ||| |||||||||| ||||  ||||||||||||||||||||| |||| ||| |||||||           |||||||||     
T  34576782 acaaagaaaagtctagagacatgaatactctagttcatatgactagaaggatctagaaaagttaagatttctctagtgcgtaattttattttatttagta 34576881  T
Q  117 -agtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
     |||||| |||||| ||||  ||||||  ||||||| |||||||||| || ||||| |||||||||||||||||||||||||||||||    
T  34576882 gagtgtccagtagcttcctcgttattctttagtattttagagacttccatattattctttagtgttctagagacttccacattattct 34576969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 29801993 - 29801805
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctta--tttag 115  Q
    |||||||| |||||||||||||||||||||||||||| || |||| ||||  ||||||||||| ||||||  | |||| ||  | ||||||||  |||||    
T  29801993 aatatctacaaacaaagaaaagtctagagatatggatgctatagttcatatgactagaaggatttagaaacattaagatttttccagtgcttaattttag 29801894  T
Q  116 tagtgtctagtagc----atccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattatt 201  Q
     |||||||||||||     ||||||||||||  |||||||||||| |||||  | ||||| ||| |||||||||||||||||| ||||||    
T  29801893 -agtgtctagtagctagattccttattattctttagtattctagatacttccctattattctttggtgttctagagacttccatattatt 29801805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 187
Target Start/End: Complemental strand, 23859996 - 23859825
Alignment:
Q  29 acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgc-----------ttatttagta 117  Q
    ||||||||| | ||||| | ||| |||||||||| ||||| ||||||||||||||||||||  |||| ||| ||||||            ||||||||||    
T  23859996 acaaagaaaggcctagaaacatgcatactctagttcataagactagaaggatctagaaaagctaagatttctctagtgtctaattttattttatttagta 23859897  T
Q  118 g--tgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagag 187  Q
    |  ||| ||||||| ||||||||||| | |||||||||||||||| | || ||||| |||||||||||||||    
T  23859896 gaatgtttagtagcttccttattatttcatagtattctagagactcccatattattctttagtgttctagag 23859825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 18966282 - 18966480
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctt-------- 109  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||| ||  ||||||||||||||||||  | |||| || ||||||||||            
T  18966282 aatatctagaaaccaagaaaagtcaagagatatggatactctagtacgtatgactagaaggatctagaaacattaagattttcctagtgcttaattttat 18966381  T
Q  110 ---atttagt--agtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 203  Q
       |||||||  ||| |||||||||  ||||||||||  |||||||||||||||||||  | ||||| ||| |||||||||||||||||||||||||||    
T  18966382 ttcatttagtagagtatctagtagctaccttattattatctagtattctagagacttccctattattctttggtgttctagagacttccacattattct 18966480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 1701179 - 1701104
Alignment:
Q  31 aaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtg 106  Q
    ||||||||| ||||| ||||||||| |||| | ||||  ||||||||||||||||||||| |||| ||||||||||    
T  1701179 aaagaaaagcctagaaatatggataatctaattcatatgactagaaggatctagaaaagttaagatttccctagtg 1701104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 8535578 - 8535522
Alignment:
Q  32 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaa 88  Q
    |||||||||||||||||||||||||| ||||  |||  |||||||||||||| ||||    
T  8535578 aagaaaagtctagagatatggatactttagtttatatgactagaaggatctaaaaaa 8535522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 29352 - 29261
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctta 110  Q
    ||||||||||||||| |||||||||||||||||||||  |||||||||||  ||||||||||||||||||  | |||| ||||||||||||||    
T  29352 aatatctagaaacaa-gaaaagtctagagatatggatgttctagtacatatgactagaaggatctagaaacattaagatttccctagtgctta 29261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 31667 - 31574
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatat--ggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctta 110  Q
    |||||||| |||||| |||||||||||||||||  ||||  |||||||||||  ||||||||||||||||||  | |||| ||||||||||||||    
T  31667 aatatctaaaaacaa-gaaaagtctagagatatatggatgttctagtacatatgactagaaggatctagaaacattaagatttccctagtgctta 31574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 1629 - 1579
Alignment:
Q  18 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataa 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1629 aatatctagaaacaaagaaaagtctagagatatggatactctagtacataa 1579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 171
Target Start/End: Complemental strand, 21199281 - 21199149
Alignment:
Q  47 atatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctt------atttagtag--tgtctagtagcatccttatt 138  Q
    |||||||||||| ||| ||||  ||||||||||||||||||  | |||| ||  |||||||||      |||||||||  ||| ||||||| ||||||||    
T  21199281 atatggatactccagttcatatgactagaaggatctagaaacattaagatttaactagtgctttattttatttagtagagtgtatagtagcttccttatt 21199182  T
Q  139 attccctagtattctagagacttctattttatt 171  Q
    ||||| |||||||||||||||||| || |||||    
T  21199181 attccatagtattctagagacttccatattatt 21199149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 11358 - 11287
Alignment:
Q  121 tctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttc 192  Q
    ||||||||| ||||||||||||  ||  ||| |||||||||| || ||||| ||||||||||||||||||||    
T  11358 tctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 11287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 73153 - 73105
Alignment:
Q  155 gagacttctattttattatttagtgttctagagacttccacattattct 203  Q
    ||||||||||| ||||| |||||| ||||||||||||||| ||||||||    
T  73153 gagacttctatattattctttagtcttctagagacttccatattattct 73105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University