View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_7 (Length: 497)
Name: NF20316_low_7
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_7 |
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| [»] scaffold0771 (2 HSPs) |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: scaffold0771 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 155 - 497
Target Start/End: Original strand, 2339 - 2683
Alignment:
| Q |
155 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaaattcatctgtcatcatcttcgcatgtccttaggt-atgtttttaaagtaaatgtgaacac |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2339 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaaattcatctgtcatcatcttcgcatgtccttaggtgatgtttttaaagtaaatgtgaacac |
2438 |
T |
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| Q |
254 |
aaaaagcatattatttatttggaaatttattctgatcagtgattaattaatacaatgttaaatatagtctcctgttaccaatttacttgtataagaaaat |
353 |
Q |
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| T |
2439 |
aagaagcatattatttatttggaaatttattctgatcagtgattaattaatacaatgttaaatatagtctactgttaccaatttacttgtctaagaaaat |
2538 |
T |
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| Q |
354 |
tggacgaacatttatcgaacatagatgctgattaaaatatgatttgcttcttgtcatatggagtcggc-gatcttgcttactgaagtattatgaagacta |
452 |
Q |
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| T |
2539 |
tggacaaacatttatcgaaaatggatgctgattaaaatatgatttgcttcttgtcatatggagtcggcaggtcttgcttactcaagtattatgaagatta |
2638 |
T |
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| Q |
453 |
aatcattagtgcctttgtctcaagaaaatgtacaatttattagcc |
497 |
Q |
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| T |
2639 |
aaccattagtgcctttgtctcaagaaaatgtacaattttttagcc |
2683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 2151 - 2340
Alignment:
| Q |
14 |
gaaggtatgcttgtcaatggcagtaccaaaggtttgaagccatgtcatgaccaattacaaaagctttgatatatgtttttatttctaacacgttcttcta |
113 |
Q |
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| T |
2151 |
gaaggtatgcttgtcaatggcagtaccaaaggtctgcagccatgtcatgaccaattacaaaagctttgatatctgtttttatttctaccacgttcttcta |
2250 |
T |
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| Q |
114 |
atatttaaactcaaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaaattcatctg |
203 |
Q |
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| T |
2251 |
atatttaaactcaaatttctttgaatatcattgaatgttgatggtaggtaatttgtgacgcgaattgtgggaaacatctaaattcatctg |
2340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 155 - 497
Target Start/End: Original strand, 13950199 - 13950543
Alignment:
| Q |
155 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaaattcatctgtcatcatcttcgcatgtccttaggt-atgtttttaaagtaaatgtgaacac |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13950199 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaaattcatctgtcatcatcttcgcatgtccttaggtgatgtttttaaagtaaatgtgaacac |
13950298 |
T |
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| Q |
254 |
aaaaagcatattatttatttggaaatttattctgatcagtgattaattaatacaatgttaaatatagtctcctgttaccaatttacttgtataagaaaat |
353 |
Q |
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| T |
13950299 |
aagaagcatattatttatttggaaatttattctgatcagtgattaattaatacaatgttaaatatagtctactgttaccaatttacttgtctaagaaaat |
13950398 |
T |
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| Q |
354 |
tggacgaacatttatcgaacatagatgctgattaaaatatgatttgcttcttgtcatatggagtcggc-gatcttgcttactgaagtattatgaagacta |
452 |
Q |
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| T |
13950399 |
tggacaaacatttatcgaaaatggatgctgattaaaatatgatttgcttcttgtcatatggagtcggcaggtcttgcttactcaagtattatgaagatta |
13950498 |
T |
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| Q |
453 |
aatcattagtgcctttgtctcaagaaaatgtacaatttattagcc |
497 |
Q |
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| T |
13950499 |
aaccattagtgcctttgtctcaagaaaatgtacaattttttagcc |
13950543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 13950011 - 13950200
Alignment:
| Q |
14 |
gaaggtatgcttgtcaatggcagtaccaaaggtttgaagccatgtcatgaccaattacaaaagctttgatatatgtttttatttctaacacgttcttcta |
113 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
13950011 |
gaaggtatgcttgtcaatggcagtaccaaaggtctgcagccatgtcatgaccaattacaaaagctttgatatctgtttttatttctaccacgttcttcta |
13950110 |
T |
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| Q |
114 |
atatttaaactcaaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaaattcatctg |
203 |
Q |
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| T |
13950111 |
atatttaaactcaaatttctttgaatatcattgaatgttgatggtaggtaatttgtgacgcgaattgtgggaaacatctaaattcatctg |
13950200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 190 - 477
Target Start/End: Original strand, 20900680 - 20900970
Alignment:
| Q |
190 |
tctaaattcatctgtcatcatcttcgcatgtccttaggt-atgtttttaaagtaaatgtgaacacaaaaagcatattatttatttggaaatttattctga |
288 |
Q |
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||||| |||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||| ||||||||||||||||| |||||||||| || |
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| T |
20900680 |
tctaagttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatgt |
20900779 |
T |
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| Q |
289 |
tcagtgattaattaatacaatgttaaatatagtctcctgtta-ccaatttacttgtataagaaaattggacgaacatttatcgaacatagatgctgatta |
387 |
Q |
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| T |
20900780 |
taagtgtttaattaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttttagaacatatatgctgatta |
20900879 |
T |
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| Q |
388 |
aaatatgatttgcttcttgtcatatggagtcgg-cgatcttgcttactgaagtattatgaagactaaatcattagtgcctttgtctcaaga |
477 |
Q |
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| T |
20900880 |
aaataagatttgtttcttgtcatatggactcggaaggtcctgcatactcaagttttatgaagattaaaccattagtgcctttgtttcaaga |
20900970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 20900261 - 20900423
Alignment:
| Q |
32 |
ggcagtaccaaaggtttgaagccatgtcatgaccaattacaaaagctttgatatatgtttttatttctaacacgttcttctaatatttaaactcaaattt |
131 |
Q |
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| T |
20900261 |
ggcagtactgaagttttaaagccatgtcattacctattacaaaagctttgatacctgtttttatttctaacacgttcttctaatatttaaactcaaattt |
20900360 |
T |
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| Q |
132 |
ctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
194 |
Q |
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| T |
20900361 |
ctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
20900423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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