View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_8 (Length: 497)
Name: NF20316_low_8
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 37 - 459
Target Start/End: Complemental strand, 37281448 - 37281025
Alignment:
| Q |
37 |
caaacatgtacttggtttttctaaatccaatcctcaaacattatacatacaaaattcttaacttttactataatttctaccatctttttattaatgttta |
136 |
Q |
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| T |
37281448 |
caaacatgtacttggtttttctaaatccaatcctcaaacattatacatacaaaattcttaacttttactataatttctaccatctttttattaatgttta |
37281349 |
T |
|
| Q |
137 |
agagatttatttttcttgtcaaagtaaaagaataagctagtactagtttaaaagaataattgtttctccacaattcagcaatctcaacaatttatatagt |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37281348 |
agagatttatttttcttgtcaaagtaaaagaataagctagtactagtttaaaagaataattgtttctccacaagtcagcaatctcaacaatttatatagt |
37281249 |
T |
|
| Q |
237 |
gttgtatatggtgattatgtaaaattgaacaccaattattatgacaaacacattacataactcctctcaaaatgacaaacaacaacacatttcatataat |
336 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37281248 |
gttgtatatggtgattatgtaaaattgaacaacaattattatgacaaacacattacataactcctctcaaaatgacaaacaacaacacatttcatataat |
37281149 |
T |
|
| Q |
337 |
gagttgtcagtctgtttcaaaatcagactttggtgtatgtaatgattacattacatatcccctnnnnnnnnttacgagtgatcaggacaaagttatg-aa |
435 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
37281148 |
gagttgttagtctgtttcaaaatcagactttggtgtatgtaatgattacattacatatcccctaaaaaaaattacgagtgatcaggacaaagttatgaaa |
37281049 |
T |
|
| Q |
436 |
tacataactaagtagtgatcatac |
459 |
Q |
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|||||||||||||||||||||||| |
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| T |
37281048 |
tacataactaagtagtgatcatac |
37281025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 37261722 - 37261671
Alignment:
| Q |
180 |
tagtttaaaagaataattgtttctccacaattcagcaatctcaacaatttat |
231 |
Q |
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| T |
37261722 |
tagtttaaaagaataatcgttcctccacaattcaacattctcaacaatttat |
37261671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 457
Target Start/End: Complemental strand, 37277241 - 37277193
Alignment:
| Q |
410 |
acgagtgatcaggacaaagttatgaa-tacataactaagtagtgatcat |
457 |
Q |
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| T |
37277241 |
acgagtgatcaagacaaagttaagaaatacataactaagtagtgatcat |
37277193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 37277409 - 37277366
Alignment:
| Q |
191 |
aataattgtttctccacaattcagcaatctcaacaatttatata |
234 |
Q |
| |
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|||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
37277409 |
aataattgtttctccataattcaataatctcaacaatttatata |
37277366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 37265489 - 37265444
Alignment:
| Q |
187 |
aaagaataattgtttctccacaattcagcaatctcaacaatttata |
232 |
Q |
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|||||||||||||| |||||||||||| | ||||||||||||||| |
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|
| T |
37265489 |
aaagaataattgttcctccacaattcaacgttctcaacaatttata |
37265444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 37277332 - 37277299
Alignment:
| Q |
256 |
taaaattgaacaccaattattatgacaaacacat |
289 |
Q |
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| T |
37277332 |
taaaattgaacaacaattattatgacaaacacat |
37277299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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