View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20316_low_9 (Length: 489)
Name: NF20316_low_9
Description: NF20316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20316_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 474
Target Start/End: Original strand, 6898662 - 6899117
Alignment:
| Q |
19 |
aagttcttgtactaagtagcagtgaaatggccaaagaatgttttactctccacgacaaaacattttccactagacccttagttgcagcctcaaaattaat |
118 |
Q |
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| T |
6898662 |
aagttcttgtactaagtagcagtgaaatggccaaagaatgttttactctccacgacaaaacattttccactagacccttagttgcagcctcaaaattaat |
6898761 |
T |
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| Q |
119 |
gggttacaactatgctatgtttggtttcactccttatggtccttattggcgtgagataaggaagttagctacacttgagcttctttcaaatcaccgactc |
218 |
Q |
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| T |
6898762 |
gggttacaactatgctatgtttggtttcactccttatggtccttattggcgtgagataaggaaattagctacacttgagcttctttcgaatcaccgactc |
6898861 |
T |
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| Q |
219 |
gaactgttgaaggacacaagagtatctgagatagaagctgcagtaagtgagctttataggttatggtcgataaagggttgtccaaaagaaggtgttttgg |
318 |
Q |
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| T |
6898862 |
gaactgttgaaggacacaagagtatctgagatagaagctgcagtaagtgagctttataggttatggtcgataaagggttgtccaaaagaaggtgttttgg |
6898961 |
T |
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| Q |
319 |
ttgatatgaagcagtggtttggtgatttgacacaaaatattgctctgagaatggtgggagggaagacatactatggtgctggcgaaggtgacgctaggag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
6898962 |
ttgatatgaagcagtggtttggtgatttgacacaaaatattgctctgagaatggtgggagggaagacatactatggtgctggtgaaggtgaagctaggag |
6899061 |
T |
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| Q |
419 |
gtataaggaagctatgagagattgggtgtgtttgtttggtatgtttgtggtctctg |
474 |
Q |
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| T |
6899062 |
gtataaggaagctatgagagattgggtgtgtttgtttggtatgtttgtggtctctg |
6899117 |
T |
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