View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20317_high_10 (Length: 204)
Name: NF20317_high_10
Description: NF20317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20317_high_10 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 35034977 - 35035172
Alignment:
| Q |
9 |
gagaagaatcgattttacctagatcagttttgagctttaatctaatgaaataaagccctaacatggaggtaaagatttcaccacctatgaacattaatat |
108 |
Q |
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| T |
35034977 |
gagaagaatcgattttacctagatcagttttgagctttaatctaatgaaataaagccctaacatggaggtaaagatttcaccacctatgaacattaagat |
35035076 |
T |
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| Q |
109 |
ggtaatgatgattaattgagggttagaaaaaatttgcatttcaaccgtggacatgcttgaaactgtggtggctgaaacggatgtgaagaacaaatc |
204 |
Q |
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| T |
35035077 |
ggtaatgatgattaattgagggttagaaaaaaattccatttcaaccgtggacatgcttgaaactgtggtggatgaaacggatgtgaagaacaaatc |
35035172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 34974253 - 34974448
Alignment:
| Q |
9 |
gagaagaatcgattttacctagatcagttttgagctttaatctaatgaaataaagccctaacatggaggtaaagatttcaccacctatgaacattaatat |
108 |
Q |
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| T |
34974253 |
gagaagaagcaattttatctagctcagttttgagccttgacctaatgaaaaaaagtcctaccattgatgtaaaaacttcaccacctatgaacattaagat |
34974352 |
T |
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| Q |
109 |
ggtaatgatgattaattgagggttagaaaaaatttgcatttcaaccgtggacatgcttgaaactgtggtggctgaaacggatgtgaagaacaaatc |
204 |
Q |
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| T |
34974353 |
ggtaatgatgattaattgagggttagaaaaattttgcatttcaaccgtggacatgcttgaaactgtggtggctgaaatggatgtgaagaacaaatc |
34974448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 34955800 - 34955986
Alignment:
| Q |
18 |
cgattttacctagatcagttttgagctttaatctaatgaaataaagccctaacatggaggtaaagatttcaccacctatgaacattaatatggtaatgat |
117 |
Q |
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| T |
34955800 |
cgattttatctaaatcaattttgagccttgacctaatgaaaaaaagtcctaccaatgatgtaaagacttcaccacctatgaacattaagatggtaatgat |
34955899 |
T |
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| Q |
118 |
gattaattgagggttagaaaaaatttgcatttcaaccgtggacatgcttgaaactgtggtggctgaaacggatgtgaagaacaaatc |
204 |
Q |
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| T |
34955900 |
gattaattgagtgttagaaaaaattcccatttcaaccgtgaccatgcttgaaactgtggtggatgaaacggatgtgaagaacaaatc |
34955986 |
T |
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