View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20317_low_1 (Length: 585)
Name: NF20317_low_1
Description: NF20317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20317_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 17 - 570
Target Start/End: Complemental strand, 32831040 - 32830480
Alignment:
| Q |
17 |
cttgcttctgattgaaaggagtatgaaatatgtggtttttaataagatttctaaaatatgacttgatgtttaagtttcacatctacatgatgacaaagta |
116 |
Q |
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| T |
32831040 |
cttgcttctaattaaaaggagtatgaaatatgtggtttttaataagatttctaaaatatgacttgatgtttaagtttcacatctacatgatgacaaagta |
32830941 |
T |
|
| Q |
117 |
atttcttgctcggctaactaagaaagtcatatac---gagatgggagggcaatatactaggagtaacaaggtagcattggtatatttatattgtatttaa |
213 |
Q |
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|||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |
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| T |
32830940 |
atttcttgctaggctaactaagaaagtcataaactaggagatgggagggcaatatactaggagtaacaaggtagcattggtctatatctattgtatttaa |
32830841 |
T |
|
| Q |
214 |
gaactcaaaaagacaagatagtgttgcggttggaaactcttggacctataaacatgttggattggtcatatgttgctccgctctcccaatgac-cnnnnn |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32830840 |
gaactcaaaaagacaagatagtgttgcggttggaaactcttggacctataaacatgttggattggtcatatgttgctccgctctcccaatgactaaaaaa |
32830741 |
T |
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| Q |
313 |
nnnngta---actccatgaacaattttaaagaaatgctaacttgttaaagctttttattttcaggaaaatttcaagcatttgttattgctagctagtgtt |
409 |
Q |
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||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32830740 |
aaaagtaactactacatgaacaattttaaagaaatgctaacttgttaaagctttttattttcaggaaaatttcaagcatttgttattgctagctagtgtt |
32830641 |
T |
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| Q |
410 |
atgttaagtttgttattcattaatgaataatgaagaattttcttttttcaatgaaccaccttgtggtggtggagacaatcatgttctaacatatacattg |
509 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32830640 |
atgtcaagtttgttattcattaatgaataatgaagaattttctttttttaatgaaccaccttgtggtggtggagacaatcatgttctaacatatacattg |
32830541 |
T |
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| Q |
510 |
gtaattagtggttactcaatatggtgtctacctagtagttccaaccgtaatttgccacttt |
570 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32830540 |
gtaattggtggttactcaatatggtgtctacctggtagttccaaccgtaatttgccacttt |
32830480 |
T |
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